Tandem repeat (TR) regions are common in yeast adhesins, but their structures are unknown, and their activities are poorly understood. TR regions in Candida albicans Als proteins are conserved glycosylated 36-residue sequences with cell-cell aggregation activity (J. M. Rauceo, R. De Armond, H. Otoo, P. C. Kahn, S. A. Klotz, N. K. Gaur, and P. N. Lipke, Eukaryot. Cell 5:1664–1673, 2006). Ab initio modeling with either Rosetta or LINUS generated consistent structures of three-stranded antiparallel beta-sheet domains, whereas randomly shuffled sequences with the same composition generated various structures with consistently higher energies. O- and N-glycosylation patterns showed that each TR domain had exposed hydrophobic surfaces surrounded by glycosylation sites. These structures are consistent with domain dimensions and stability measurements by atomic force microscopy (D. Alsteen, V. Dupres, S. A. Klotz, N. K. Gaur, P. N. Lipke, and Y. F. Dufrene, ACS Nano 3:1677–1682, 2009) and with circular dichroism determination of secondary structure and thermal stability. Functional assays showed that the hydrophobic surfaces of TR domains supported binding to polystyrene surfaces and other TR domains, leading to nonsaturable homophilic binding. The domain structures are like “classic” subunit interaction surfaces and can explain previously observed patterns of promiscuous interactions between TR domains in any Als proteins or between TR domains and surfaces of other proteins. Together, the modeling techniques and the supporting data lead to an approach that relates structure and function in many kinds of repeat domains in fungal adhesins.
Frank, Aaron T.; Ramsook, Caleen B.; Otoo, Henry N.; Tan, Cho; Soybelman, Gregory; Rauceo, Jason M.; Gaur, Nand K.; Klotz, Stephen A.; and Lipke, Peter N., "Structure and Function of Glycosylated Tandem Repeats from Candida albicans Als Adhesins" (2010). CUNY Academic Works.
SUpplemental file 1. Table S1, showing predicted glycosylation sites in Als repeats. Figure S1, showing energies and rmsd variations for modeled structures of Als5p-R4 and best structures for randomly permuted sequences of the same amino acid composition. Figure S2, circular dichroism analysis of thermal denaturation and renaturation for Als5p1-443.