Date of Award

Spring 5-3-2024

Document Type

Thesis

Degree Name

Master of Science (MS)

Department

Computer Science

First Advisor

Lei, Xie

Second Advisor

Hansaim Lim

Third Advisor

Subash Shankar

Academic Program Adviser

Subash Shankar

Abstract

This project is to investigate and assess several Transformer topologies for the modeling of protein sequences and their corresponding uses. Each major model for the protein sequence representations is inspected with its mathematical theory and analyzed for the different performance of the models with various validation repositories.

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