Publications and Research

 

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Works from 2019

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Eighteen Blind Library Users’ Experiences with Library Websites and Search Tools in U.S. Academic Libraries: A Qualitative Study, Adina Mulliken

Works from 2018

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Fair Use as Creative Muse: An Ongoing Case Study, Malin Abrahamsson and Stephanie Margolin

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Chronic voluntaryoral methamphetamine induces deficits inspatiallearningand hippocampal proteinkinase Mzeta withenhanced astrogliosis and cyclooxygenase-2 levels, Jorge A. Avila, Roseanna M. Zanca, Denis Shor, Nicholas Paleologos, Amber A. Alliger, Maria E. Figueiredo-Pereira, and Peter A. Serrano

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Target engagement imaging of PARP inhibitors in small-cell lung cancer, Brandon Carney, Susanne Kossatz, Benjamin H. Lok, Valentina Schneeberger, Kishore K. Gangangari, Naga Vara Kishore Pillarsetty, Wolfgang A. Weber, Charles M. Rudin, John T. Poirier, and Thomas Reiner

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Primordial origin and diversification of plasmids in Lyme disease agent bacteria, Sherwood R. Casjens, Lia Di, Saymon Akther, Emmanuel F. Mongodin, Benjamin J. Luft, Steven E. Schutzer, Claire M. Fraser, and Weigang Qiu

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When the Far-Right Attacks Faculty Online, They are Attacking Public Higher Education, Jessie Daniels

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BpWrapper: BioPerl-based sequence and tree utilities for rapid prototyping of bioinformatics pipelines, Yözen Hernández, Rocky Bernstein, Pedro Pagan, Levy Vargas, William McCaig, Girish Ramrattan, Saymon Akther, Amanda Larracuente, Lia Di, Filipe G. Vieira, and Weigang Qiu

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Designing a Summer Transition Program for Incoming and Current College Students on the Autism Spectrum: A Participatory Approach, Emily Hotez, Christina Shane-Simpson, Rita Obeid, Danielle DeNigris, Michael Siller, Corinna Costikas, Jonathan Pickens, Anthony Massa, Michael Giannola, Joanne D'Onofrio, and Kristen Gillespie-Lynch

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Proactive Empirical Assessment of New Language Feature Adoption via Automated Refactoring: The Case of Java 8 Default Methods, Raffi T. Khatchadourian and Hidehiko Masuhara

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Proactive Empirical Assessment of New Language Feature Adoption via Automated Refactoring: The Case of Java 8 Default Methods, Raffi T. Khatchadourian and Hidehiko Masuhara

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Precocious development of self-awareness in dolphins, Rachel Morrison and Diana Reiss

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Factors associated with perceived accuracy of the Undetectable = Untransmittable slogan among men who have sex with men: Implications for messaging scale-up and implementation, H Jonathon Rendina and J T. Parsons

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Strains of bacterial species induce a greatly varied acute adaptive immune response: The contribution of the accessory genome, Uri Sela, Chad W. Euler, Joel Correa da Rosa, and Vincent A. Fischetti

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The Microbe Directory: An annotated, searchable inventory of microbes’ characteristics, Heba Shaaban, David A. Westfall, Rawhi Mohammad, David Danko, Daniela Bezdan, Ebrahim Afshinnekoo, Nicola Segata, and Christopher E. Mason

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Which Wars Spread? Commitment Problems and Military Intervention, Zachary C. Shirkey

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The Hidden Curriculum in Financial Literacy: Economics, Standards, and the Teaching of Young Children, Debbie Sonu and Anand R. Marri

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Market Integration Predicts Human Gut Microbiome Attributes across a Gradient of Economic Development, Keaton Stagaman, Tara J. Cepon-Robins, Melissa A. Liebert, Theresa E. Gildner, Samuel S. Urlacher, Felicia C. Madimenos, Karen Guillemin, J. Josh Snodgrass, Lawrence S. Sugiyama, and Brendan J. M. Bohannan

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Poster: Towards safe refactoring for intelligent parallelization of Java 8 streams, Yiming Tang, Raffi T. Khatchadourian, Mehdi Bagherzadeh, and Syed Ahmed

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Poster: Towards safe refactoring for intelligent parallelization of Java 8 streams, Yiming Tang, Raffi T. Khatchadourian, Mehdi Bagherzadeh, and Syed Ahmed

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Chinese Garden of Friendship and Sydney’s Chinatown : Friendship and Something Beyond at Darling Harbor, Wendy W. Tan

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Melbourne’s Chinatown: Continuous Chinese Enclave For 168 Years In Australia, Wendy W. Tan

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Evidence for energetic tradeoffs between physical activity and childhood growth across the nutritional transition, Samuel S. Urlacher and Karen L. Kramer

Works from 2017

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The Effect of Hydrogen Bonding in Enhancing the Ionic Affinities of Immobilized Monoprotic Phosphate Ligands, Spiro D. Alexandratos and Xiaoping Liu

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Reference Mode Preferences of Community College and Four-Year College Students, John Carey and Ajatshatru Pathak

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Plasmid diversity and phylogenetic consistency in the Lyme disease agent Borrelia burgdorferi, Sherwood R. Casjens, Eddie B. Gilcrease, Marija Vujadinovic, Emmanuel F. Mongodin, Benjamin J. Luft, Steven E. Schutzer, Claire M. Fraser, and Wei-Gang Qiu

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Demonstration of ultra-high recyclable energy densities in domain-engineered ferroelectric films, Hongbo Cheng, Jun Ouyang, Yun-Xiang Zhang, David J. Ascienzo, Yao Li, Yu-Yao Zhao, and Yuhang Ren

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Updating temporal expectancy of an aversive event engages striatal plasticity under amygdala control, Glenn Dallérac, Michael Graupner, Jeroen Knippenberg, Raquel Chacon Ruiz Martinez, Tatiane Ferreira Tavares, Lucille Tallot, Nicole El Massioui, Anna Verschueren, Sophie Höhn, Julie Boulanger Bertolus, Alex D. Reyes, Joseph E. LeDoux, Glenn E. Schafe, Lorenzo Diaz-Mataix, and Valérie Doyère

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Twitter and White Supremacy: A Love Story, Jessie Daniels

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Fibronectin and androgen receptor expression data in prostate cancer obtained from a RNA-sequencing bioinformatics analysis, Dibash K. Das, Thahmina Ali, Konstantinos Krampis, and Olorunseun O. Ogunwobi

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Nurse perception of care of hospitalized older adults – a comparative study between northern and central regions of Portugal, João Paulo de Almeida Tavares, Alcione Leite da Silva, Pedro Sá-Couto, Marie Boltz, and Elizabeth Capezuti

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Critical Time Intervention for Homeless People Making the Transition to Community Living: A Randomized Controlled Trial, Renée de Vet, Mariëlle D. Beijersbergen, Irene E. Jonker, Danielle AM Lako, Albert M. van Hemert, Daniel B. Herman, and Judith RLM Wolf

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Critical Agrarian Studies in Theory and Practice, Marc Edelman and Wendy Wolford

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The use of physical restraints in long-term care in Spain: a multi-center cross-sectional study, Gabriel J. Estévez-Guerra, Emilio Fariña-López, Eduardo Núñez-González, Manuel Gandoy-Crego, Fernando Calvo-Francés, and Elizabeth Capezuti

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The Paucity of Frugivores in Madagascar May Not Be Due to Unpredictable Temperatures or Fruit Resources, Sarah Federman, Miranda Sinnott-Armstrong, Andrea L. Baden, Colin A. Chapman, Douglas C. Daly, Alison R. Richard, Kim Valenta, and Michael J. Donoghue

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mRNA Processing Factor CstF-50 and Ubiquitin Escort Factor p97 Are BRCA1/BARD1 Cofactors Involved in Chromatin Remodeling during the DNA Damage Response, Danae Fonseca, Jorge Baquero, Michael R. Murphy, Gamage Aruggoda, Sophia Varriano, Carmen Saplenza, Oksana Mashadova, Shadaqur Rahman, and Frida E. Kleiman

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Egg discrimination along a gradient of natural variation in eggshell coloration, Daniel Hanley, Tomáš Grim, Branislav Igic, Peter Samaš, Analía V. López, Matthew D. Shawkey, and Mark E. Hauber

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The effects of asking a fertility intention question in primary care settings: a systematic review protocol, Paul A. Henning, Carolyne K. Burgess, Heidi E. Jones, and Wendy V. Norman

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The History Books Tell It? Collective Bargaining in Higher Education in the 1940s, William A. Herbert

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Reproductive history before and after HIV diagnosis: A cross-sectional study in HIV-positive women in Spain, Victoria Hernando, Belen Alejos, Marta Montero, M Jesús Pérez-Elias, José Ramón Blanco, Livia Giner, Juan Luis Gómez-Sirvent, Jose Antonio Iribarren, Enrique Bernal, and Francisco Bolumar

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Body size and lower limb posture during walking in humans, Martin Hora, Libor Soumar, Herman Pontzer, and Vladimír Sládek

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Measuring the Energy of Ventilation and Circulation during Human Walking using Induced Hypoxia, Masahiro Horiuchi, Yoshiyuki Fukuoka, Yoko Handa, Daijiro Abe, and Herman Pontzer

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Midbrain circuit regulation of individual alcohol drinking behaviors in mice, Barbara Juarez, Carole Morel, Stacy M. Ku, Yutong Liu, Hongxing Zhang, Sarah Montgomery, Hilledna Gregoire, Efrain Ribeiro, Marshall Crumiller, Ciorana Roman-Ortiz, Jessica J. Walsh, Kelcy Jackson, Denise E. Croote, Yingbo Zhu, Song Zhang, Leandro F. Vendruscolo, Scott Edward, Amanda Roberts, Georgia E. Hodes, Yongke Lu, Erin S. Calipari, Dipesh Chaudhury, Allyson K. Friedman, and Ming-Hu Han

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Pretargeting of internalizing trastuzumab and cetuximab with a 18F-tetrazine tracer in xenograft models, Outi Keinänen, Kimberly Fung, Jacob Pourat, Vilma Jallinoja, Delphine Vivier, NagaVara Kishore Pillarsetty, Anu J. Airaksinen, Jason S. Lewis, Brian M. Zeglis, and Mirkka Sarparanta

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Thermodynamic and Kinetic Analyses of Iron Response Element (IRE)-mRNA Binding to Iron Regulatory Protein, IRP1, Mateen A. Khan, William E. Walden, Elizabeth C. Theil, and Dixie J. Goss

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Automated Refactoring of Legacy Java Software to Default Methods, Raffi T. Khatchadourian and Hidehiko Masuhara

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Automated Refactoring of Legacy Java Software to Default Methods, Raffi T. Khatchadourian and Hidehiko Masuhara

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Automated Refactoring of Legacy Java Software to Default Methods, Raffi T. Khatchadourian and Hidehiko Masuhara

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Defaultification Refactoring: A Tool for Automatically Converting Java Methods to Default, Raffi T. Khatchadourian and Hidehiko Masuhara

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Detecting Broken Pointcuts Using Structural Commonality and Degree of Interest, Raffi T. Khatchadourian, Awais Rashid, Hidehiko Masuhara, and Takuya Watanabe

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Bio-Docklets: virtualization containers for single-step execution of NGS pipelines, Baekdoo Kim, Thahmina Ali, Carlos Lijeron, Enis Afgan, and Konstantinos Krampis

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Older adults and mobile technology: Factors that enhance and inhibit utilization in the context of behavioral health, Alexis Kuerbis, Adina Mulliken, Frederick Muench, Alison A. Moore, and Daniel Gardner

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Characteristics of individuals seeking a text messaging intervention for problem drinking: Adults 51 and older versus middle-aged and younger adults, Alexis Kuerbis, Katherine van Stolk-Cooke, and Frederick J. Muench

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Estrogen-activated MDM2 disrupts mammary tissue architecture through a p53-independent pathway, Nandini Kundu, Angelika Brekman, Jun Yeob Kim, Gu Xiano, Chong Gao, and Jill Bargonetti

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Action-Packed Action Research: How Comic Books, Questions, and Reflection Can Transform Information Literacy Instruction, Sarah Laleman Ward, Stephanie M. Margolin, and Mason Brown

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Going Beyond the Existing Consensus: The Use of Games in International Relations Education, Michael Lee and Zachary C. Shirkey

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Osteosarcoma cell proliferation and survival requires mGluR5 receptor activity and is blocked by Riluzole, Sally Liao, Yuleisy Ruiz, Hira Gulzar, Zarina Yelskaya, Lyes Ait Taouit, Murielle Houssou, Trisha Jaikaran, Yuriy Schvarts, Kristina Kozlitina, Upal Basu-Roy, Alka Mansukhani, and Shahana S. Mahajan

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Songbirds work around computational complexity by learning song vocabulary independently of sequence, Dina Lipkind, Anja T. Zai, Alexander Hanuschkin, Gary F. Marcus, Ofer Tchernichovski, and Richard H.R. Hahnloser

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"Where Are the Bathrooms?": Academic Library Restrooms and Student Needs, Stephanie Margolin and Jennifer Poggiali

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Lifestyle and vascular risk effects on MRI-based biomarkers of Alzheimer’s disease: a cross-sectional study of middle-aged adults from the broader New York City area, Lisa Mosconi, Michelle Walters, Joanna Sterling, Crystal Quinn, Pauline McHugh, Randolph E. Andrews, Dawn C. Matthews, Christine Ganzer, Ricardo S. Osorio, Richard S. Isaacson, Mony J. De Leon, and Antonio Convit

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A randomized controlled pilot trial of different mobile messaging interventions for problem drinking, Frederick Muench, Katherine van Stolk-Cooke, Alexis Kuerbis, Gertraud Stadler, Amit Baumel, Sijing Shao, James R. McKay, and Jon Morgenstern

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“There is Nothing Inherently Mysterious about Assistive Technology”: A Qualitative Study about Blind User Experiences in US Academic Libraries, Adina Mulliken

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Faculty Visions for Teaching Web Accessibility within LIS Curricula in the United States: A Qualitative Study, Adina Mulliken and Mireille Djenno

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Cancer cell spheroids are a better screen for the photodynamic efficiency of glycosylated photosensitizers, Patrícia M. R. Pereira, Naxhije Berisha, N.V.S. Dinesh K. Bhupathiraju, Rosa Fernandes, João P.C. Tomé, and Charles Michael Drain

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Identification, validation, and targeting of the mutant p53- PARP-MCM chromatin axis in triple negative breast cancer, Wei-Gang Qiu, Alla Polotskaia, Gu Xiao, Lia Di, Yuhan Zhao, Wenwei Hu, John Philip, Ronald C. Hendrickson, and Jill Bargonetti

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Peripheral blood clinical laboratory variables associated with outcomes following combination nivolumab and ipilimumab immunotherapy in melanoma, Samuel Rosner, Erica Kwong, Alexander N. Shoushtari, Claire F. Friedman, Allison S. Betof, Mary Sue Brady, Daniel G. Coit, Margaret K. Callahan, Jedd D. Wolchok, Paul B. Chapman, Katherine S. Panageas, and Michael A. Postow

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MILITARY INTERVENTION IN INTERSTATE AND CIVIL WARS: A UNIFIED INTERPRETATION, Zachary C. Shirkey

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Joining by Number: Military Intervention in Civil Wars, Zachary C. Shirkey

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Gait changes in a line of mice artificially selected for longer limbs, Leah M. Sparrow, Emily Pellattt, Sabrina S. Yu, David A. Raichlen, Herman Pontzer, and Campbell Rolian

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Chinatowns in Latin America, Wendy W. Tan

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Are Fireworms Venomous? Evidence for the Convergent Evolution of Toxin Homologs in Three Species of Fireworms (Annelida, Amphinomidae), Aida Verdes, Danny Simpson, and Mandë Holford

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Chelator-Free Radiolabeling of SERRS Nanoparticles for Whole-Body PET and Intraoperative Raman Imaging, Matthew A. Wall, Travis Shaffer, Stefan Harmsen, Darjus-Felix Tschaharganeh, Chun-Hao Huang, Scott W. Lowe, Charles Michael Drain, and Moritz F. Kircher

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Transgender and Gender Nonconforming Youths’ Public Facilities Use and Psychological Well-Being: A Mixed-Method Study, Lance S. Weinhardt, Patricia Stevens, Hui Xie, Linda M. Wesp, Steven A. John, Immaculate Apchemengich, David Kioko, Shannon Chavez-Korell, Katherine M. Cochran, Jennifer M. Watjen, and Nickolas H. Lambrou

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A Mendelian randomization study of the effect of calcium on coronary artery disease, myocardial infarction and their risk factors, Lin Xu, Shi Lin Lin, and C. Mary Schooling

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RedeAmericas: building research capacity in young leaders for sustainable growth in community mental health services in Latin America, L. Yang, C. Pratt, E. Valencia, S. Conover, R. Fernández, M.S. Burrone, M.T. Cavalcanti, G. Lovisi, G. Rojas, R. Alvarado, S. Galea, L. N. Price, and E. Susser

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Bow-tie signaling in c-di-GMP: Machine learning in a simple biochemical network, Jinyuan Yan, Maxime Deforet, Kerry E. Boyle, Rayees Rahman, Raymond Liang, Chinweike Okegbe, Lars E. P. Dietrich, Weigang Qiu, and Joao B. Xavier

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Persistent amygdala novelty response is associated with less anterior cingulum integrity in trauma-exposed women, Seungyeon A. Yoon and Mariann R. Weierich

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Insights into the binding mode of MEK type-III inhibitors. A step towards discovering and designing allosteric kinase inhibitors across the human kinome, Zheng Zhao, Lei Xie, and Philip E. Bourne

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The farnesoid X receptor negatively regulates osteoclastogenesis in bone remodeling and pathological bone loss, Ting Zheng, Ju-Hee Kang, Jung-Sun Sim, Jung-Woo Kim, Jeong-Tae Koh, Chan Soo Shin, Hyungsik Lim, and Mijung Yim

Works from 2016

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A Pretargeted Approach for the Multimodal PET/NIRF Imaging of Colorectal Cancer, Pierre Adumeau, Kathryn E. Carnazza, Christian Brand, Sean D. Carlin, Thomas Reiner, Brian J. Agnew, Jason S. Lewis, and Brian M. Zeglis

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Site-Specifically Labeled Immunoconjugates for Molecular Imaging—Part 1: Cysteine Residues and Glycans, Pierre Adumeau, Sai Kiran Sharma, Colleen Brent, and Brian M. Zeglis

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Mesenchymal Stem Cell Fate: Applying Biomaterials for Control of Stem Cell Behavior, Hilary J. Anderson, Jugal Kishore Sahoo, Rein V. Ulijn, and Matthew J. Dalby

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Investigation of Electric Field–Induced Structural Changes at Fe-Doped SrTiO3 Anode Interfaces by Second Harmonic Generation, David Ascienzo, Haochen Yuan, Steven Greenbaum, Thorsten J. Bayer, Russell A. Maier, Jian-Jun Wang, Clive A. Randall, Elizabeth C. Dickey, Haibin Zhao, and Yuhang Ren

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Eating in East Harlem: An Assessment of Changing Foodscapes in Community District 11, 2000-2015, CUNY Urban Food Policy Institute At the CUNY School of Public Health and Health Policy, Nicholas Freudenberg, Melissa Fuster, Diana Johnson, Marissa Sheldon, Michele Silver, Apoorva Srivastava, Janet Poppendieck, Ashley Rafalow, and Nevin Cohen

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Molecular Mechanisms of Stress-Induced Increases in Fear Memory Consolidation within the Amygdala, Antonio V. Aubry, Peter A. Serrano, and Nesha S. Burghardt

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HIV Glycoprotein Gp120 Impairs Fast Axonal Transport by Activating Tak1 Signaling Pathways, Sarah H. Berth, Nichole Mesnard-Hoaglin, Bin Wang, Hajwa Kim, Yuyu Song, Maria Sapar, Gerardo Morfini, and Scott T. Brady

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Women in the GIS Profession, Livia Betancourt-Mazur and Jochen Albrecht

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Eggshell pigment composition covaries with phylogeny, Kaat Brulez, Ivan Miksik, Christopher R. Cooney, Mark E. Hauber, Paul George Lovell, Golo Maurer, Steven J. Portugal, Douglas Russell, Silas James Reynolds, and Phillip Cassey

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The Trouble with White Feminism: Whiteness, Digital Feminism and the Intersectional Internet, Jessie Daniels

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Molecular Tracking of Individual Host Use in the Shiny Cowbird – a Generalist Brood Parasite, Ma Alicia de la Colina, Mark E. Hauber, Bill M. Strausberger, Juan Carlos Reboreda, and Bettina Mahler

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Intronic cleavage and polyadenylation regulates gene expression during DNA damage response through U1 snRNA, Emral Devany, Ji Yeon Park, Michael R. Murphy, George Zakusilo, Jorge Baquero, Xiaokan Zhang, Mainul Hoque, Bin Tian, and Frida E. Kleiman

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Principles and Practices Fostering Inclusive Excellence: Lessons from the Howard Hughes Medical Institute’s Capstone Institutions, Patricia Marten DiBartolo, Leslie Gregg-Jolly, Deborah Gross, Cathryn A. Manduca, Ellen Iverson, David B. Cooke III, Gregory K. Davis, Cameron Davidson, Paul E. Hertz, Lisa Hibbard, Shubha K. Ireland, Catherine Mader, Aditi Pai, Shirley Raps, Kathleen Siwicki, and Jim E. Swartz

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FHF-independent conduction of action potentials along the leak-resistant cerebellar granule cell axon, Katarzyna Dover, Christopher Marra, Sergio Solinas, Marko Popovic, Sathyaa Subramaniyam, Dejan Zecevic, Egidio D'Angelo, and Mitchell Goldfarb

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Untangling the Relationship Between Antiretroviral Therapy Use and Incident Pregnancy: A Marginal Structural Model Analysis Using Data From 47,313 HIV-Positive Women in East Africa, Batya Elul, Kara K. Wools-Kaloustian, Yingfeng Wu, Beverly S. Musick, Harriet Nuwagaba-Biribonwoha, Denis Nash, Samuel Ayaya, Elizabeth Bukusi, Pius Okong, Juliana Otieno, Deo Wabwire, Andrew Kambugu, and Constantin T. Yiannoutsos

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Statistical learning in songbirds: from self-tutoring to song culture, Olga Fehér, Iva Ljubičić, Kenta Suzuki, Kazuo Okanoya, and Ofer Tchernichovski

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Oil & Gas Drilling in National Parks, Elizabeth Ann Glass Geltman

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INQUIRY INTO THE IMPLEMENTATION OF BUSH’S EXECUTIVE ORDER 13211 AND THE IMPACT ON ENVIRONMENTAL AND PUBLIC HEALTH REGULATION, Elizabeth Ann Glass Geltman, Gunwant Gill, and Miriam Jovanovic

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Beyond Baby Steps An Empirical Study of the Impact of Environmental Justice Executive Order 12898, Elizabeth Ann Glass Geltman, Gunwant Gill, and Miriam Jovanovic

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Regional variation in Ascaris lumbricoides and Trichuris trichiura infections by age cohort and sex: effects of market integration among the indigenous Shuar of Amazonian Ecuador, Theresa E. Gildner, Tara J. Cepon-Robins, Melissa A. Liebert, Samuel S. Urlacher, Felicia C. Madimenos, J. Josh Snodgross, and Lawrence S. Sugiyama

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The Ubiquitin-Proteasome System: Potential Therapeutic Targets for Alzheimer’s Disease and Spinal Cord Injury, Bing Gong, Miroslav Radulovic, Maria E. Figueiredo-Pereira, and Christopher Cardozo

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Sexual behavior varies between same-race and different-race partnerships: A daily diary study of highly sexually active Black, Latino, and White gay and bisexual men, Christian Grov, Demetria Cain, H. Jonathan Rendina, Ana Ventuneac, and Jeffrey T. Parsons