Publications and Research

 

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Works from 2019

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Racial and Ethnic Disparities in Palliative Care: A Systematic Scoping Review, Daniel Gardner, Meredith Doherty, Gleneara Bates, Aliza Koplow, and Sarah C. Johnson

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Eighteen Blind Library Users’ Experiences with Library Websites and Search Tools in U.S. Academic Libraries: A Qualitative Study, Adina Mulliken

Works from 2018

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Fair Use as Creative Muse: An Ongoing Case Study, Malin Abrahamsson and Stephanie Margolin

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GIS Project Management, Jochen Albrecht

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Chronic voluntaryoral methamphetamine induces deficits inspatiallearningand hippocampal proteinkinase Mzeta withenhanced astrogliosis and cyclooxygenase-2 levels, Jorge A. Avila, Roseanna M. Zanca, Denis Shor, Nicholas Paleologos, Amber A. Alliger, Maria E. Figueiredo-Pereira, and Peter A. Serrano

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Facilitating Video Analysis for Teacher Development: A Systematic Review of the Research, Laura H. Baecher, Shiao-Chuan Kung, Sarah Laleman Ward, and Kimberly Kern

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Target engagement imaging of PARP inhibitors in small-cell lung cancer, Brandon Carney, Susanne Kossatz, Benjamin H. Lok, Valentina Schneeberger, Kishore K. Gangangari, Naga Vara Kishore Pillarsetty, Wolfgang A. Weber, Charles M. Rudin, John T. Poirier, and Thomas Reiner

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Primordial origin and diversification of plasmids in Lyme disease agent bacteria, Sherwood R. Casjens, Lia Di, Saymon Akther, Emmanuel F. Mongodin, Benjamin J. Luft, Steven E. Schutzer, Claire M. Fraser, and Weigang Qiu

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When the Far-Right Attacks Faculty Online, They are Attacking Public Higher Education, Jessie Daniels

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Use and Awareness of Library Services among Faculty at Two Armenian Universities, D. Aram Donabedian, John Carey, and Arshak Balayan

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Evolution of the modern baboon (Papio hamadryas): A reassessment of the African Plio-Pleistocene record, Christopher C. Gilbert, Stephen R. Frost, Kelsey D. Pugh, Monya Anderson, and Eric Delson

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BpWrapper: BioPerl-based sequence and tree utilities for rapid prototyping of bioinformatics pipelines, Yözen Hernández, Rocky Bernstein, Pedro Pagan, Levy Vargas, William McCaig, Girish Ramrattan, Saymon Akther, Amanda Larracuente, Lia Di, Filipe G. Vieira, and Weigang Qiu

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Designing a Summer Transition Program for Incoming and Current College Students on the Autism Spectrum: A Participatory Approach, Emily Hotez, Christina Shane-Simpson, Rita Obeid, Danielle DeNigris, Michael Siller, Corinna Costikas, Jonathan Pickens, Anthony Massa, Michael Giannola, Joanne D'Onofrio, and Kristen Gillespie-Lynch

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MSW Interns at Public Libraries: Fostering Collaboration For Change, Sarah C. Johnson

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Proactive Empirical Assessment of New Language Feature Adoption via Automated Refactoring: The Case of Java 8 Default Methods, Raffi T. Khatchadourian and Hidehiko Masuhara

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Proactive Empirical Assessment of New Language Feature Adoption via Automated Refactoring: The Case of Java 8 Default Methods, Raffi T. Khatchadourian and Hidehiko Masuhara

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A Tool for Optimizing Java 8 Stream Software via Automated Refactoring, Raffi T. Khatchadourian, Yiming Tang, Mehdi Bagherzadeh, and Syed Ahmed

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Precocious development of self-awareness in dolphins, Rachel Morrison and Diana Reiss

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Use and Awareness of Reference Management Software Among Community College Students, Ajatshatru Pathak and Sarah Johnson,

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Essential Methods for Planning Practitioners: Skills and Techniques for Data Analysis, Visualization, and Communication, Laxmi Ramasubramanian and Jochen Albrecht

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Factors associated with perceived accuracy of the Undetectable = Untransmittable slogan among men who have sex with men: Implications for messaging scale-up and implementation, H Jonathon Rendina and J T. Parsons

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Strains of bacterial species induce a greatly varied acute adaptive immune response: The contribution of the accessory genome, Uri Sela, Chad W. Euler, Joel Correa da Rosa, and Vincent A. Fischetti

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The Microbe Directory: An annotated, searchable inventory of microbes’ characteristics, Heba Shaaban, David A. Westfall, Rawhi Mohammad, David Danko, Daniela Bezdan, Ebrahim Afshinnekoo, Nicola Segata, and Christopher E. Mason

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Which Wars Spread? Commitment Problems and Military Intervention, Zachary C. Shirkey

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The Hidden Curriculum in Financial Literacy: Economics, Standards, and the Teaching of Young Children, Debbie Sonu and Anand R. Marri

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Market Integration Predicts Human Gut Microbiome Attributes across a Gradient of Economic Development, Keaton Stagaman, Tara J. Cepon-Robins, Melissa A. Liebert, Theresa E. Gildner, Samuel S. Urlacher, Felicia C. Madimenos, Karen Guillemin, J. Josh Snodgrass, Lawrence S. Sugiyama, and Brendan J. M. Bohannan

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Poster: Towards safe refactoring for intelligent parallelization of Java 8 streams, Yiming Tang, Raffi T. Khatchadourian, Mehdi Bagherzadeh, and Syed Ahmed

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Poster: Towards safe refactoring for intelligent parallelization of Java 8 streams, Yiming Tang, Raffi T. Khatchadourian, Mehdi Bagherzadeh, and Syed Ahmed

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Chinese Garden of Friendship and Sydney’s Chinatown : Friendship and Something Beyond at Darling Harbor, Wendy W. Tan

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Melbourne’s Chinatown: Continuous Chinese Enclave For 168 Years In Australia, Wendy W. Tan

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Evidence for energetic tradeoffs between physical activity and childhood growth across the nutritional transition, Samuel S. Urlacher and Karen L. Kramer

Works from 2017

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The Effect of Hydrogen Bonding in Enhancing the Ionic Affinities of Immobilized Monoprotic Phosphate Ligands, Spiro D. Alexandratos and Xiaoping Liu

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Cellular Mechanisms of Cortisol-Induced Changes in Mauthner-Cell Excitability in the Startle Circuit of Goldfish, Daniel R. Bronson and Thomas Preuss

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Reference Mode Preferences of Community College and Four-Year College Students, John Carey and Ajatshatru Pathak

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Reference Mode Preferences of Community College (Two-Year) and Four-Year College Students: A Comparison Study, John Carey and Ajatshatru Pathak

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Plasmid diversity and phylogenetic consistency in the Lyme disease agent Borrelia burgdorferi, Sherwood R. Casjens, Eddie B. Gilcrease, Marija Vujadinovic, Emmanuel F. Mongodin, Benjamin J. Luft, Steven E. Schutzer, Claire M. Fraser, and Wei-Gang Qiu

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Demonstration of ultra-high recyclable energy densities in domain-engineered ferroelectric films, Hongbo Cheng, Jun Ouyang, Yun-Xiang Zhang, David J. Ascienzo, Yao Li, Yu-Yao Zhao, and Yuhang Ren

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LemurFaceID: a face recognition system to facilitate individual identification of lemurs, David Crouse, Rachel L. Jacobs, Zach Richardson, Scott Klum, Anil Jain, Andrea L. Baden, and Stacey R. Tecot

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Updating temporal expectancy of an aversive event engages striatal plasticity under amygdala control, Glenn Dallérac, Michael Graupner, Jeroen Knippenberg, Raquel Chacon Ruiz Martinez, Tatiane Ferreira Tavares, Lucille Tallot, Nicole El Massioui, Anna Verschueren, Sophie Höhn, Julie Boulanger Bertolus, Alex D. Reyes, Joseph E. LeDoux, Glenn E. Schafe, Lorenzo Diaz-Mataix, and Valérie Doyère

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Twitter and White Supremacy: A Love Story, Jessie Daniels

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Fibronectin and androgen receptor expression data in prostate cancer obtained from a RNA-sequencing bioinformatics analysis, Dibash K. Das, Thahmina Ali, Konstantinos Krampis, and Olorunseun O. Ogunwobi

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A novel microRNA-1207-3p/FNDC1/FN1/AR regulatory pathway in prostate cancer, Dibash K. Das and Olorunseun O. Ogunwobi

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Nurse perception of care of hospitalized older adults – a comparative study between northern and central regions of Portugal, João Paulo de Almeida Tavares, Alcione Leite da Silva, Pedro Sá-Couto, Marie Boltz, and Elizabeth Capezuti

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Emotional cue validity effects: The role of neurocognitive responses to emotion, Samantha Denefrio, Akeesha Simmons, Amishi Jha, and Tracy A. Dennis-Tiwary

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Critical Time Intervention for Homeless People Making the Transition to Community Living: A Randomized Controlled Trial, Renée de Vet, Mariëlle D. Beijersbergen, Irene E. Jonker, Danielle AM Lako, Albert M. van Hemert, Daniel B. Herman, and Judith RLM Wolf

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Activistas empedernidos e intelectuales comprometidos: Ensayos sobre movimientos sociales, derechos humanos y estudios latinoamericanos, Marc Edelman

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Critical Agrarian Studies in Theory and Practice, Marc Edelman and Wendy Wolford

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The use of physical restraints in long-term care in Spain: a multi-center cross-sectional study, Gabriel J. Estévez-Guerra, Emilio Fariña-López, Eduardo Núñez-González, Manuel Gandoy-Crego, Fernando Calvo-Francés, and Elizabeth Capezuti

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The Paucity of Frugivores in Madagascar May Not Be Due to Unpredictable Temperatures or Fruit Resources, Sarah Federman, Miranda Sinnott-Armstrong, Andrea L. Baden, Colin A. Chapman, Douglas C. Daly, Alison R. Richard, Kim Valenta, and Michael J. Donoghue

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State reform and respect for the rights of the disabled people: A reflection on the Olmstead decision the case of New York state, Roseanne L. Flores

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The rising gap between rich and poor: A look at the persistence of educational disparities in the United States and why we should worry, Roseanne L. Flores

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mRNA Processing Factor CstF-50 and Ubiquitin Escort Factor p97 Are BRCA1/BARD1 Cofactors Involved in Chromatin Remodeling during the DNA Damage Response, Danae Fonseca, Jorge Baquero, Michael R. Murphy, Gamage Aruggoda, Sophia Varriano, Carmen Saplenza, Oksana Mashadova, Shadaqur Rahman, and Frida E. Kleiman

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Tunneling of hybridized pairs of electrons through a one-dimensional channel, Godfrey Gumbs, Danghong Huang, Julie Hon, M. Pepper, and Sanjeev Kumar

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Egg discrimination along a gradient of natural variation in eggshell coloration, Daniel Hanley, Tomáš Grim, Branislav Igic, Peter Samaš, Analía V. López, Matthew D. Shawkey, and Mark E. Hauber

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The effects of asking a fertility intention question in primary care settings: a systematic review protocol, Paul A. Henning, Carolyne K. Burgess, Heidi E. Jones, and Wendy V. Norman

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The History Books Tell It? Collective Bargaining in Higher Education in the 1940s, William A. Herbert

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Reproductive history before and after HIV diagnosis: A cross-sectional study in HIV-positive women in Spain, Victoria Hernando, Belen Alejos, Marta Montero, M Jesús Pérez-Elias, José Ramón Blanco, Livia Giner, Juan Luis Gómez-Sirvent, Jose Antonio Iribarren, Enrique Bernal, and Francisco Bolumar

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Body size and lower limb posture during walking in humans, Martin Hora, Libor Soumar, Herman Pontzer, and Vladimír Sládek

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Measuring the Energy of Ventilation and Circulation during Human Walking using Induced Hypoxia, Masahiro Horiuchi, Yoshiyuki Fukuoka, Yoko Handa, Daijiro Abe, and Herman Pontzer

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RSEQREP: RNA-Seq Reports, an open-source cloud-enabled framework for reproducible RNA-Seq data processing, analysis, and result reporting [version 1; referees: 2 approved with reservations], Travis L. Jensen, Michael Frasketi, Kevin Conway, Leigh Villarroel, Heather Hill, Konstantinos Krampis, and Johannes B. Goll

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Midbrain circuit regulation of individual alcohol drinking behaviors in mice, Barbara Juarez, Carole Morel, Stacy M. Ku, Yutong Liu, Hongxing Zhang, Sarah Montgomery, Hilledna Gregoire, Efrain Ribeiro, Marshall Crumiller, Ciorana Roman-Ortiz, Jessica J. Walsh, Kelcy Jackson, Denise E. Croote, Yingbo Zhu, Song Zhang, Leandro F. Vendruscolo, Scott Edward, Amanda Roberts, Georgia E. Hodes, Yongke Lu, Erin S. Calipari, Dipesh Chaudhury, Allyson K. Friedman, and Ming-Hu Han

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Pretargeting of internalizing trastuzumab and cetuximab with a 18F-tetrazine tracer in xenograft models, Outi Keinänen, Kimberly Fung, Jacob Pourat, Vilma Jallinoja, Delphine Vivier, NagaVara Kishore Pillarsetty, Anu J. Airaksinen, Jason S. Lewis, Brian M. Zeglis, and Mirkka Sarparanta

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Thermodynamic and Kinetic Analyses of Iron Response Element (IRE)-mRNA Binding to Iron Regulatory Protein, IRP1, Mateen A. Khan, William E. Walden, Elizabeth C. Theil, and Dixie J. Goss

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Algorithmically complex residually finite groups, Olga Kharlampovich, Alexei Myanikov, and Mark Sapir

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Automated Refactoring of Legacy Java Software to Default Methods, Raffi T. Khatchadourian and Hidehiko Masuhara

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Automated Refactoring of Legacy Java Software to Default Methods, Raffi T. Khatchadourian and Hidehiko Masuhara

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Automated Refactoring of Legacy Java Software to Default Methods, Raffi T. Khatchadourian and Hidehiko Masuhara

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Defaultification Refactoring: A Tool for Automatically Converting Java Methods to Default, Raffi T. Khatchadourian and Hidehiko Masuhara

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Detecting Broken Pointcuts Using Structural Commonality and Degree of Interest, Raffi T. Khatchadourian, Awais Rashid, Hidehiko Masuhara, and Takuya Watanabe

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Bio-Docklets: virtualization containers for single-step execution of NGS pipelines, Baekdoo Kim, Thahmina Ali, Carlos Lijeron, Enis Afgan, and Konstantinos Krampis

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Older adults and mobile technology: Factors that enhance and inhibit utilization in the context of behavioral health, Alexis Kuerbis, Adina Mulliken, Frederick Muench, Alison A. Moore, and Daniel Gardner

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Characteristics of individuals seeking a text messaging intervention for problem drinking: Adults 51 and older versus middle-aged and younger adults, Alexis Kuerbis, Katherine van Stolk-Cooke, and Frederick J. Muench

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Estrogen-activated MDM2 disrupts mammary tissue architecture through a p53-independent pathway, Nandini Kundu, Angelika Brekman, Jun Yeob Kim, Gu Xiano, Chong Gao, and Jill Bargonetti

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Action-Packed Action Research: How Comic Books, Questions, and Reflection Can Transform Information Literacy Instruction, Sarah Laleman Ward, Stephanie M. Margolin, and Mason Brown

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Going Beyond the Existing Consensus: The Use of Games in International Relations Education, Michael Lee and Zachary C. Shirkey

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Osteosarcoma cell proliferation and survival requires mGluR5 receptor activity and is blocked by Riluzole, Sally Liao, Yuleisy Ruiz, Hira Gulzar, Zarina Yelskaya, Lyes Ait Taouit, Murielle Houssou, Trisha Jaikaran, Yuriy Schvarts, Kristina Kozlitina, Upal Basu-Roy, Alka Mansukhani, and Shahana S. Mahajan

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Songbirds work around computational complexity by learning song vocabulary independently of sequence, Dina Lipkind, Anja T. Zai, Alexander Hanuschkin, Gary F. Marcus, Ofer Tchernichovski, and Richard H.R. Hahnloser

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miRNAs associated with prostate cancer risk and progression, Hung N. Luu, Hui-Yi Lin, Karina Dalsgaard Sorensen, Olorunseun O. Ogunwobi, Nagi Kumar, Ganna Chornokur, Catherine Phelan, Dominique Jones, LaCreis Kidd, Jyotsna Batra, Kosj Yamoah, Anders Berglund, Robert J. Rounbehler, Mihi Yang, Sang Haak Lee, Nahyeon Kang, Seung Joon Kim, Jong Y. Park, and Giuliano Di Pietro

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"Where Are the Bathrooms?": Academic Library Restrooms and Student Needs, Stephanie Margolin and Jennifer Poggiali

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Lifestyle and vascular risk effects on MRI-based biomarkers of Alzheimer’s disease: a cross-sectional study of middle-aged adults from the broader New York City area, Lisa Mosconi, Michelle Walters, Joanna Sterling, Crystal Quinn, Pauline McHugh, Randolph E. Andrews, Dawn C. Matthews, Christine Ganzer, Ricardo S. Osorio, Richard S. Isaacson, Mony J. De Leon, and Antonio Convit

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A randomized controlled pilot trial of different mobile messaging interventions for problem drinking, Frederick Muench, Katherine van Stolk-Cooke, Alexis Kuerbis, Gertraud Stadler, Amit Baumel, Sijing Shao, James R. McKay, and Jon Morgenstern

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“There is Nothing Inherently Mysterious about Assistive Technology”: A Qualitative Study about Blind User Experiences in US Academic Libraries, Adina Mulliken

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Faculty Visions for Teaching Web Accessibility within LIS Curricula in the United States: A Qualitative Study, Adina Mulliken and Mireille Djenno

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Teaching Systematic Searching Methods to Public Health Graduate Students: Repeated Library Instruction Sessions Correlate With Better Assignment Scores, John Pell

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Cancer cell spheroids are a better screen for the photodynamic efficiency of glycosylated photosensitizers, Patrícia M. R. Pereira, Naxhije Berisha, N.V.S. Dinesh K. Bhupathiraju, Rosa Fernandes, João P.C. Tomé, and Charles Michael Drain

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Identification, validation, and targeting of the mutant p53- PARP-MCM chromatin axis in triple negative breast cancer, Wei-Gang Qiu, Alla Polotskaia, Gu Xiao, Lia Di, Yuhan Zhao, Wenwei Hu, John Philip, Ronald C. Hendrickson, and Jill Bargonetti

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Peripheral blood clinical laboratory variables associated with outcomes following combination nivolumab and ipilimumab immunotherapy in melanoma, Samuel Rosner, Erica Kwong, Alexander N. Shoushtari, Claire F. Friedman, Allison S. Betof, Mary Sue Brady, Daniel G. Coit, Margaret K. Callahan, Jedd D. Wolchok, Paul B. Chapman, Katherine S. Panageas, and Michael A. Postow

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MILITARY INTERVENTION IN INTERSTATE AND CIVIL WARS: A UNIFIED INTERPRETATION, Zachary C. Shirkey

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Joining by Number: Military Intervention in Civil Wars, Zachary C. Shirkey

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Transitions between risk management regimes in cities, William Solecki, Mark Pelling, and Matthias Garschagen

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Gait changes in a line of mice artificially selected for longer limbs, Leah M. Sparrow, Emily Pellattt, Sabrina S. Yu, David A. Raichlen, Herman Pontzer, and Campbell Rolian

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Chinatowns in Latin America, Wendy W. Tan

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Climate Change Across Seasons Experiment (CCASE): A new method for simulating future climate in seasonally snow-covered ecosystems, Pamela H. Templer, Andrew B. Reinmann, Rebecca Sanders-DeMott, Patrick O. Sorensen, Stephanie M. Juice, Francis Bowles, Laura E. Sofen, Jamie L. Harrison, Ian Halm, Lindsey Rustad, Mary E. Martin, and Nicholas Grant

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Sexual dimorphism in striatal dopaminergic responses promotes monogamy in social songbirds, Kirill Tokarev, Julia Hyland Bruno, Iva Ljubicic, Paresh J. Kothari, Santosh A. Helekar, Ofer Tchernichovski, and Henning U. Voss

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Are Fireworms Venomous? Evidence for the Convergent Evolution of Toxin Homologs in Three Species of Fireworms (Annelida, Amphinomidae), Aida Verdes, Danny Simpson, and Mandë Holford

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Chelator-Free Radiolabeling of SERRS Nanoparticles for Whole-Body PET and Intraoperative Raman Imaging, Matthew A. Wall, Travis Shaffer, Stefan Harmsen, Darjus-Felix Tschaharganeh, Chun-Hao Huang, Scott W. Lowe, Charles Michael Drain, and Moritz F. Kircher

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Transgender and Gender Nonconforming Youths’ Public Facilities Use and Psychological Well-Being: A Mixed-Method Study, Lance S. Weinhardt, Patricia Stevens, Hui Xie, Linda M. Wesp, Steven A. John, Immaculate Apchemengich, David Kioko, Shannon Chavez-Korell, Katherine M. Cochran, Jennifer M. Watjen, and Nickolas H. Lambrou

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A Mendelian randomization study of the effect of calcium on coronary artery disease, myocardial infarction and their risk factors, Lin Xu, Shi Lin Lin, and C. Mary Schooling

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RedeAmericas: building research capacity in young leaders for sustainable growth in community mental health services in Latin America, L. Yang, C. Pratt, E. Valencia, S. Conover, R. Fernández, M.S. Burrone, M.T. Cavalcanti, G. Lovisi, G. Rojas, R. Alvarado, S. Galea, L. N. Price, and E. Susser

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Bow-tie signaling in c-di-GMP: Machine learning in a simple biochemical network, Jinyuan Yan, Maxime Deforet, Kerry E. Boyle, Rayees Rahman, Raymond Liang, Chinweike Okegbe, Lars E. P. Dietrich, Weigang Qiu, and Joao B. Xavier