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Works from 2018

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Enabling precision medicine via standard communication of HTS provenance, analysis, and results, Gil Alterovitz, Dennis Dean, Carole Globe, Michael R. Crusoe, Stiam Soiland-Reyes, Amanda Bell, Anais Hayes, Anita Suresh, Anjan Purkkayastha, Charles H. King, Dan Taylor, Elaine Johanson, Elaine E. Thompson, Eric Donaldson, Hiroki Morizono, Hsinyi Tsang, Jeet K. Vora, Jeremy Goecks, Jianchao Yao, Jonas S. Almeida, Jonathon Keeney, KanakaDurga Addepalli, Konstantinos Krampis, Krista M. Smith, Lydia Guo, Mark Walderhaug, Marco Schito, Matthew Ezewudo, Nuria Guimera, Paul Walsh, Robel Kahsay, Srikanth Gottipati, Timothy C. Rodwell, Toby Bloom, Yuching Lai, Vahan Simonyan, and Raja Mazumder

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Chronic voluntary oral methamphetamine induces deficits in spatial learning and hippocampal protein kinase Mzeta with enhanced astrogliosis and cyclooxygenase-2 levels, Jorge A. Avila, Roseanna M. Zanca, Denis Shor, Nicholas Paleologos, Amber A. Alliger, Maria E. Figueiredo-Pereira, and Peter A. Serrano

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A description of nesting behaviors, including factors impacting nest site selection, in black‐and‐white ruffed lemurs (Varecia variegata), Andrea L. Baden

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Facilitating Video Analysis for Teacher Development: A Systematic Review of the Research, Laura H. Baecher, Shiao-Chuan Kung, Sarah Laleman Ward, and Kimberly Kern

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Bad Bunny, Good Scapegoat: How 'El Conejo Malo' Is Stirring a 'Moral Panic' in Post-Hurricane Puerto Rico, Yarimar Bonilla

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Leveraging PET to image folate receptor α therapy of an antibody-drug conjugate, Christian Brand, Ahmad Sadique, Jacob L. Houghton, Kishore Gangagari, Jose F. Ponte, Jason S. Lewis, Naga Vara Kishore Pillarsetty, Joseph A. Konner, and Thomas Reiner

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Target engagement imaging of PARP inhibitors in small-cell lung cancer, Brandon Carney, Susanne Kossatz, Benjamin H. Lok, Valentina Schneeberger, Kishore K. Gangangari, Naga Vara Kishore Pillarsetty, Wolfgang A. Weber, Charles M. Rudin, John T. Poirier, and Thomas Reiner

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Primordial origin and diversification of plasmids in Lyme disease agent bacteria, Sherwood R. Casjens, Lia Di, Saymon Akther, Emmanuel F. Mongodin, Benjamin J. Luft, Steven E. Schutzer, Claire M. Fraser, and Weigang Qiu

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Prostaglandin D2/J2 signaling pathway in a rat model of neuroinflammation displaying progressive parkinsonian-like pathology: potential novel therapeutic targets, Chuhyon Corwin, Anastasia Nikolopoulou, Allen L. Pan, Mariela Nunez-Santos, Shankar Vallabhajosula, Peter A. Serrano, John Babich, and Maria E. Figueiredo-Pereira

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The algorithmic rise of the “alt-right”, Jessie Daniels

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W.E.B. DuBois for the Twenty‐First Century: On Being a Scholar‐Activist in the Digital Era, Jessie Daniels

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When the Far-Right Attacks Faculty Online, They are Attacking Public Higher Education, Jessie Daniels

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White Women, U.S. Popular Culture, and Narratives of Addiction, Jessie Daniels

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Single olfactory receptors set odor detection thresholds, Adam Dewan, Annika Cichy, Jingji Zhang, Kayla Miguel, Paul Feinstein, Dmitry Rinberg, and Thomas Bozza

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Use and Awareness of Library Services among Faculty at Two Armenian Universities, D. Aram Donabedian, John Carey, and Arshak Balayan

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Discriminating radiation injury from recurrent tumor with [18F]PARPi and amino acid PET in mouse models, Patrick L. Donabedian, Susanne Kossatz, John A. Engelbach, Stephen A. Jannetti, Brandon Carney, Robert J. Young, Wolfgang A. Weber, Joel R. Garbow, and Thomas Reiner

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‘Haciendas and Plantations’: History and limitations of a 60-year-old taxonomy, Marc Edelman

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Using Drosophila behavioral assays to characterize terebrid venompeptide bioactivity, Anders Eriksson, Prachi Anand, Juliette Gorson, Corina Grijuc, Elina Hadelia, James C. Stewart, Mandë Holford, and Adam Claridge-Chang

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LIM Protein Ajuba associates with the RPA complex through direct cell cycle-dependent interaction with the RPA70 subunit, Sandy Fowler, Pascal Maguin, Sampada Kalan, and Diego Loayza

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Disparities in pulmonary fibrosis care in the United States: an analysis from the Nationwide Inpatient Sample, Adam W. Gaffney, Steffie Woolhander, David Himmelstein, and Danny McCormick

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TMSOTf assisted synthesis of 2’-deoxy-2’-[18F] fluoro-β-D-arabinofuranosylcytosine ([18F] FAC), Kishore K. Gangangari, John L. Humm, Steven M. Larson, and Naga Vara Kishore Pillarsetty

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Evolution of the modern baboon (Papio hamadryas): A reassessment of the African Plio-Pleistocene record, Christopher C. Gilbert, Stephen R. Frost, Kelsey D. Pugh, Monya Anderson, and Eric Delson

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Building Brand Kurdistan: Helly Luv, the Gender of Nationhood, and the War on Terror, Nicholas S. Glastonbury

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BpWrapper: BioPerl-based sequence and tree utilities for rapid prototyping of bioinformatics pipelines, Yözen Hernández, Rocky Bernstein, Pedro Pagan, Levy Vargas, William McCaig, Girish Ramrattan, Saymon Akther, Amanda Larracuente, Lia Di, Filipe G. Vieira, and Weigang Qiu

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A new insight into underlying disease mechanism through semi-parametric latent differential network model, Yong He, Jiadong Ji, Lei Xie, Xinsheng Zhang, and Fuzhong Xue

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An Interview with Cesare Montecucco, Mandë Holford and Andreas Rummel

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Thrive With Me: Protocol for a Randomized Controlled Trial to Test a Peer Support Intervention to Improve Antiretroviral Therapy Adherence Among Men Who Have Sex With Men, Keith J. Horvath, K. Rivet Amico, Darin Erickson, Alexandra M. Ecklund, Aldona Martinka, James DeWitt, Jeffrey McLaughlin, and Jeffrey T. Parsons

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Designing a Summer Transition Program for Incoming and Current College Students on the Autism Spectrum: A Participatory Approach, Emily Hotez, Christina Shane-Simpson, Rita Obeid, Danielle DeNigris, Michael Siller, Corinna Costikas, Jonathan Pickens, Anthony Massa, Michael Giannola, Joanne D'Onofrio, and Kristen Gillespie-Lynch

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Comparing Microbiome Sampling Methods in a Wild Mammal: Fecal and Intestinal Samples Record Different Signals of Host Ecology, Evolution, Melissa R. Ingala, Nancy B. Simmons, Claudia Wultsch, Konstantinos Krampis, Kelly A. Speer, and Susan L. Perkins

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Disequilibrium, Adaptation, and the Norse Settlement of Greenland, Rowan Jackson, Jette Arneborg, Andrew Dugmore, Christian Madsen, Tom McGovern, Konrad Smiarowski, and Richard Streeter

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MSW Interns at Public Libraries: Fostering Collaboration For Change, Sarah C. Johnson

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Social science perspectives on drivers of and responses to global, Andrew K. Jorgenson, Shirley Fiske, Klaus Hubacek, Jia Li, Tom McGovern, Torben Rick, Juliet B. Schor, William Solecki, Richard York, and Ariela Zycherman

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Not Waiting for Washington: Climate Policy Adoption in California and New York, Roger Karapin

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Proactive Empirical Assessment of New Language Feature Adoption via Automated Refactoring: The Case of Java 8 Default Methods, Raffi T. Khatchadourian and Hidehiko Masuhara

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Proactive Empirical Assessment of New Language Feature Adoption via Automated Refactoring: The Case of Java 8 Default Methods, Raffi T. Khatchadourian and Hidehiko Masuhara

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A Tool for Optimizing Java 8 Stream Software via Automated Refactoring, Raffi T. Khatchadourian, Yiming Tang, Mehdi Bagherzadeh, and Syed Ahmed

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The Relationship Between In-session Commitment Language and Daily Self-reported Commitment to Reduce or Abstain from Drinking, Alexis Kuerbis, Jessica Houser, Paul Amrhein, Hayley Treloar Padovano, and Jon Morgenstern

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Exploration of Treatment Matching to Problem Drinker Characteristics With Motivational Interviewing and Non-directive Client-centered Psychotherapy for Problem Drinkers, Alexis Kuerbis, Jessica Houser, Svetlana Levak, Sijing Shao, and Jon Morgenstern

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More Than Taking a Chair: The Perceived Group Social Dynamics of Alcoholics Anonymous Related to Changes in Spiritual Practices, Alexis Kuerbis and J. Scott Tonigan

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Comparing Daily Drivers of Problem Drinking Among Older and Younger Adults: An Electronic Daily Diary Study Using Smartphones, Alexis Kuerbis, Hayley Treloar Padovano, Sijing Shao, Jessica Houser, Frederick Muench, and Jon Morgenstern

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The effectiveness of critical time intervention for abused women leaving women’s shelters: a randomized controlled trial, Danielle A. M. Lako, Marielle D. Beijersbergen, Irene E. Jonker, Renee de Vet, Daniel B. Herman, Albert M. van Hemert, and Judith R. L. M. Wolf

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Oxytocin and cancer: An emerging link, Ben Lerman, Trisheena Harricharran, and Olorunseun O. Ogunwobi

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The International Conference on Intelligent Biology and Medicine (ICIBM) 2018: bioinformatics towards translational applications, Xiaoming Liu, Lei Xie, Zhijin Wu, Kai Wang, Zhongming Zhao, Jianhuan Ruan, and Degui Zhi

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Structure-activity profiling of alkaloid natural product pharmacophores against a Schistosoma serotonin receptor, Jonathan S. Marchant, Wayne W. Harding, and John D. Chan

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Comics, Questions, Action! Engaging Students and Instruction Librarians With the Comics-Questions Curriculum, Stephanie Margolin, Mason Brown, and Sarah Laleman Ward

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Adolescent Medicine Trials Network for HIV/AIDS Interventions Data Harmonization: Rationale and Development of Guidelines, Micah McCumber, Demetria Cain, Sara LeGrand, Kenneth H. Mayer, Debra A. Murphy, Matthew A. Psioda, Arlene C. Seña, Tyrel J. Starks, and Michael Hudgens

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Burning Libraries: A Community Response, Thomas H. McGovern

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What is it all for? Archaeology and Global Change Research, Thomas H. McGovern

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To switch or not to switch: Intentions to switch to injectable PrEP among gay and bisexual men with at least twelve months oral PrEP experience, Kathrine Meyers, Yumeng Wu, Atrina Brill, Theodorus Sandfort, and Sarit A. Golub

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Day-Level Associations Between Substance Use and HIV Risk Behavior Among a Diverse Sample of Transgender Women, Brett M. Millar, Devin English, Raymond L. Moody, H. Jonathon Rendina, Demetria Cain, Nadav Antebi-Gruszka, Joseph A. Carter, and Jeffrey T. Parsons

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Precocious development of self-awareness in dolphins, Rachel Morrison and Diana Reiss

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Unravelling the structure of glycosyl cations via cold-ion infrared spectroscopy, Eike Mucha, Mateusz Marianski, Fei-Fei Xu, Daniel A. Thomas, Gerard Meijer, Gert von Helden, Peter H. Seeberger, and Kevin Pagel

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Review of Recent Nuclear Magnetic Resonance Studies of Ion Transport in Polymer Electrolytes, Stephen Munoz and Steven Greenbaum

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“Our lab is the community”: Defining essential supporting infrastructure in engagement research, Donald E. Nease Jr., Dee Burton, Sarah L. Cutrona, Lauren Edmundson, Alex H. Krist, Michael Barton Laws, and Montelle Tamez

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Developmental transitions in amygdala PKC isoforms and AMPA receptor expression associated with threat memory in infant rats, Maya Opendak, Roseanna M. Zanca, Eben Anane, Peter Serrano, and Regina M. Sullivan

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Age-Tastic! An Evaluation of an Evidence-Based Intervention for Older Adults, Manoj Pardasani, Jackie Berman, and Mebane Powell

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Empowering With PrEP (E-PrEP), a Peer-Led Social Media–Based Intervention to Facilitate HIV Preexposure Prophylaxis Adoption Among Young Black and Latinx Gay and Bisexual Men: Protocol for a Cluster Randomized Controlled Trial, Viraj V. Patel, Zoë Ginsburg, Sarit A. Golub, Keith J. Horvath, Nataly Rios, Kenneth H. Mayer, Ryunh S. Kim, and Julia H. Arnsten

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Use and Awareness of Reference Management Software Among Community College Students, Ajatshatru Pathak and Sarah Johnson,

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African trypanosomes evade immune clearance by Oglycosylation of the VSG surface coat, Jason Pinger, Dragana Nešić, Liaqat Ali, Francisco Aresta-Branco, Mirjana Lilic, Shanin Chowdhury, Hee-Sook Kim, Joseph Verdi, Jayne Raper, Michael A. J. Ferguson, F. Nina Papavasiliou, and C. Erec Stebbins

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Predicting serious rare adverse reactions of novel chemicals, Aleksandar Poleksic and Lei Xie

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Nanoparticles as multimodal photon transducers of ionizing radiation, Edwin C. Pratt, Travis M. Shaffer, Qize Zhang, Charles Michael Drain, and Jan Grimm

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Phylogenetic relationships of living and fossil African papionins: Combined evidence from morphology and molecules, Kelsey D. Pugh and Christopher C. Gilbert

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Essential Methods for Planning Practitioners: Skills and Techniques for Data Analysis, Visualization, and Communication, Laxmi Ramasubramanian and Jochen Albrecht

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Factors associated with perceived accuracy of the Undetectable = Untransmittable slogan among men who have sex with men: Implications for messaging scale-up and implementation, H Jonathon Rendina and J T. Parsons

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Strains of bacterial species induce a greatly varied acute adaptive immune response: The contribution of the accessory genome, Uri Sela, Chad W. Euler, Joel Correa da Rosa, and Vincent A. Fischetti

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The Microbe Directory: An annotated, searchable inventory of microbes’ characteristics, Heba Shaaban, David A. Westfall, Rawhi Mohammad, David Danko, Daniela Bezdan, Ebrahim Afshinnekoo, Nicola Segata, and Christopher E. Mason

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Explaining the Illusion of Phenomenal Consciousness, Daniel S. Shabasson

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Microtubule Imaging Reveals Cytoskeletal Deficit Predisposing the Retinal Ganglion Cell Axons to Atrophy in DBA/2J, Denis Sharoukhov, Festa Bucinca-Cupallari, and Hyungsik Lim

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Challenges to the Study of Long Wars, Zachary C. Shirkey

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Introduction: The Puzzle of War Duration, Zachary C. Shirkey

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Turning to Political Violence: The Emergence of Terrorism by Marc Sageman (review), Zachary C. Shirkey

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Which Wars Spread? Commitment Problems and Military Intervention, Zachary C. Shirkey

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"Homosexuals Are Revolting": Stonewall, 1969, Erin Siodmak

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Maternal experiences of intimate partner violence and C-reactive protein levels in young children in Tanzania, Natalie Slopen, Jing Zhang, Samuel S. Urlacher, Gretchen De Silva, and Mona Mittal

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The Sociality of Post-Truth: Neoliberal Culture and its Rationality, Debbie Sonu

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Stranger-Making as Difference: Childhood Memories of Belonging and Exclusion by Undergraduates of Color, Debbie Sonu and Marissa Bellino

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The Hidden Curriculum in Financial Literacy: Economics, Standards, and the Teaching of Young Children, Debbie Sonu and Anand R. Marri

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Market Integration Predicts Human Gut Microbiome Attributes across a Gradient of Economic Development, Keaton Stagaman, Tara J. Cepon-Robins, Melissa A. Liebert, Theresa E. Gildner, Samuel S. Urlacher, Felicia C. Madimenos, Karen Guillemin, J. Josh Snodgrass, Lawrence S. Sugiyama, and Brendan J. M. Bohannan

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GoFish: A versatile nested PCR strategy for environmental DNA assays for marine vertebrates, Mark Y. Stoeckle, Mithun Das Mishu, and Zachary Charlop-Powers

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Poster: Towards safe refactoring for intelligent parallelization of Java 8 streams, Yiming Tang, Raffi T. Khatchadourian, Mehdi Bagherzadeh, and Syed Ahmed

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Poster: Towards safe refactoring for intelligent parallelization of Java 8 streams, Yiming Tang, Raffi T. Khatchadourian, Mehdi Bagherzadeh, and Syed Ahmed

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Chinese Garden of Friendship and Sydney’s Chinatown : Friendship and Something Beyond at Darling Harbor, Wendy W. Tan

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Melbourne’s Chinatown: Continuous Chinese Enclave For 168 Years In Australia, Wendy W. Tan

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Evidence for energetic tradeoffs between physical activity and childhood growth across the nutritional transition, Samuel S. Urlacher and Karen L. Kramer

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A Web-Based Interactive Tool to Reduce Childhood Obesity Risk in Urban Minority Youth: Usability Testing Study, Sandra Verdaguer, Katrina F. Mateo, Katarzyna Wyka, Tracy A. Dennis, and May May Leung

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Associations of lifestyle and vascular risk factors with Alzheimer's brain biomarker changes during middle age: a 3 year longitudinal study in the broader New York City area, Michelle J. Walters, Joanna Sterling, Crystal Quinn, Christine Ganzer, Ricardo S. Osorio, Randolph D. Andrews, Dawn C. Matthews, Shankar Vallabhajosula, Mony J. de Leon, Richard S. Isaacson, and Lisa Mosconi

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The diverse magneto-optical selection rules in bilayer black phosphorus, Jhao-Ying Wu, Szu-Chao Chen, Thi-Nga Do, Wu-Pei Su, Godfrey Gumbs, and Ming-Fa Lin

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Non-pharmacological solutions to sleep and circadian rhythm disruption: voiced bedside experiences of hospice and end-oflife staff caregivers, Rana Sagha Zadeh, Elizabeth Capezuti, Paul Eshelman, Nicole Woody, Jennifer Tiffany, and Ana C. Krieger

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Contextual fear memory modulates PSD95 phosphorylation, AMPAr subunits, PKMζ and PI3K differentially between adult and juvenile rats, Roseanna M. Zanca, Shirley Sanay, Jorge A. Avila, Edgar Rodriguez, Harry N. Shair, and Peter A. Serrano

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Hominoid intraspecific cranial variation mirrors neutral genetic diversity, Julia M. Zichello, Karen L. Baab, Kieran P. McNulty, Christopher J. Raxworthy, and Michael E. Steiper

Works from 2017

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The Effect of Hydrogen Bonding in Enhancing the Ionic Affinities of Immobilized Monoprotic Phosphate Ligands, Spiro D. Alexandratos and Xiaoping Liu

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Cellular Mechanisms of Cortisol-Induced Changes in Mauthner-Cell Excitability in the Startle Circuit of Goldfish, Daniel R. Bronson and Thomas Preuss

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Reference Mode Preferences of Community College and Four-Year College Students, John Carey and Ajatshatru Pathak

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Reference Mode Preferences of Community College (Two-Year) and Four-Year College Students: A Comparison Study, John Carey and Ajatshatru Pathak

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Plasmid diversity and phylogenetic consistency in the Lyme disease agent Borrelia burgdorferi, Sherwood R. Casjens, Eddie B. Gilcrease, Marija Vujadinovic, Emmanuel F. Mongodin, Benjamin J. Luft, Steven E. Schutzer, Claire M. Fraser, and Wei-Gang Qiu

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Demonstration of ultra-high recyclable energy densities in domain-engineered ferroelectric films, Hongbo Cheng, Jun Ouyang, Yun-Xiang Zhang, David J. Ascienzo, Yao Li, Yu-Yao Zhao, and Yuhang Ren

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Food Justice in the Trump Age: Priorities for Urban Food Advocates, Nevin Cohen, Janet Poppendieck, and Nicholas Freudenberg

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LemurFaceID: a face recognition system to facilitate individual identification of lemurs, David Crouse, Rachel L. Jacobs, Zach Richardson, Scott Klum, Anil Jain, Andrea L. Baden, and Stacey R. Tecot

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Updating temporal expectancy of an aversive event engages striatal plasticity under amygdala control, Glenn Dallérac, Michael Graupner, Jeroen Knippenberg, Raquel Chacon Ruiz Martinez, Tatiane Ferreira Tavares, Lucille Tallot, Nicole El Massioui, Anna Verschueren, Sophie Höhn, Julie Boulanger Bertolus, Alex D. Reyes, Joseph E. LeDoux, Glenn E. Schafe, Lorenzo Diaz-Mataix, and Valérie Doyère

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Twitter and White Supremacy: A Love Story, Jessie Daniels