Publications and Research

 

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Works from 2012

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Utilizing the reaction of degeneration test for individuals with focal paralysis, Thomas J. Holland

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Morph Matters: Aggression Bias in a Polymorphic Sparrow, Brent M. Horton, Mark E. Hauber, and Donna L. Maney

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New Autonomous Motors of Metal-Organic Framework (MOF) Powered by Reorganization of Self-Assembled Peptides at interfaces, Yasuhiro Ikezoe, Gosuke Washino, Takashi Uemura, Susumu Kitagawa, and Hiroshi Matsui

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Fellow travellers: a concordance of colonization patterns between mice and men in the North Atlantic region, E P. Jones, K Skirnisson, T H. McGovern, MTP Gilbert, E Willerslev, and J B. Searle

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Climate Policy Outcomes in Germany: Environmental Performance and Environmental Damage in Eleven Policy Areas, Roger Karapin

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Explaining Success and Failure in Climate Policies: Developing Theory through German Case Studies, Roger Karapin

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Pointcut Rejuvenation: Recovering Pointcut Expressions in Evolving Aspect-Oriented Software, Raffi T. Khatchadourian, Phil Greenwood, Awais Rashid, and Harry Xu

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Understanding and Addressing Unique Needs of Diabetes in Asian Americans, Native Hawaiians, and Pacific Islanders, George L. King, Marguerite J. McNeely, Lorna E. Thorpe, Marjorie L.M. Mau, Jocelyn Ko, Lenna L. Liu, Angela Sun, William C. Hsu, and Edward A. Chow

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Association of Adherence Support and Outreach Services with Total Attrition, Loss to Follow-Up, and Death among ART Patients in Sub-Saharan Africa, Matthew R. Lamb, Wafaa M. El-Sadr, Elvin Geng, and Denis Nash

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Intervening to Reduce Sedentary Behaviors and Childhood Obesity among School-Age Youth: A Systematic Review of Randomized Trials, May May Leung, Alen Agaronov, Kateryna Grytsenko, and Ming-Chin Yeh

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Effect of axonal micro-tubules on the morphology of retinal nerve fibers studied by second-harmonic generation, Hyungsik Lim and John Danias

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The Role of Dairy Products and Milk in Adolescent Obesity: Evidence from Hong Kong’s ‘‘Children of 1997’’ Birth Cohort, Shi Lin Lin, Marie Tarrant, Lai Ling Hui, Man Ki Kwok, Tai Hing Lam, Gabriel M. Leung, and Mary Schooling

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Evidence for a Grooming Claw in a North American Adapiform Primate: Implications for Anthropoid Origins, Stephanie Maiolino, Doug M. Boyer, Jonathan I. Bloch, Christopher C. Gilbert, and Joseph Groenke

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The Socialist Design: Urban Dilemmas in Postwar Europe and the Soviet Union, Elidor Mehilli

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Coordination between proteasome impairment and caspase activation leading to TAU pathology: neuroprotection by cAMP, M. J. Metcalfe, Q. Huang, and Maria E. Figueiredo-Pereira

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Crossing Over…Markov Meets Mendel, Saad Mneimneh

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1112+3548_NIR_SpeX, J. Patience

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Hunter-Gatherer Energetics and Human Obesity, Herman Pontzer, David A. Raichlen, Brian M. Wood, Audax Z. P. Mabulla, Susan B. Racette, and Frank W. Marlowe

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The light-sensitive conductance of melanopsin-expressing Joseph and Hesse cells in amphioxus, Camila Pulido, Gerardo Malagón, Camilo Ferrer, Jun Kui Chen, Juan Manuel Angueyra, Enrico Nasi, and María del Pilar Gomez

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Quantum learning without quantum memory, G. Sentís, J. Calsamiglia, R. Muñoz-Tapia, and E. Bagan

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When and How Many: The Effects of Third Party Joining on Casualties and Duration in Interstate Wars, Zachary Shirkey

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Review of Dan Reiter’s "How Wars End", Zachary C. Shirkey

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An Annotated Bibliography for the Correlates of War Interstate Wars Database, Zachary Shirkey and Alex Weisiger

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Taking Responsibility: The Multiple and Shifting Positions of Social Justice Educators, Debbie Sonu, Rachel Oppenheim, Shira Epstein, and Ruchi Agarwal

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Awareness and Interest in Intrauterine Contraceptive Device Use among HIV-Positive Women in Cape Town, South Africa, Catherine S. Todd, Heidi E. Jones, Tracy C. Garber, Hoviyeh Afnan-Holmes, Helen Woolgar, Linda-Gail Bekker, and Landon Myer

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Competition Between Conjugation and M13 Phage Infection in Escherichia coli in the Absence of Selection Pressure: A Kinetic Study, Zhenmao Wan and Noel L. Goddard

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A cross-sectional description of social capital in an international sample of persons living with HIV/AIDS (PLWH), Allison Webel, J Craig Phillips, Carol Dawson Rose, William L. Holzemer, Wei-Ti Chen, Lynda Tyer-Viola, Marta Rivero-Méndez, Patrice Nicholas, Kathleen Nokes, Jeanne Kemppainen, Elizabeth Sefcik, John Brion, Lucille Eller, Scholastika Iipinge, Kenn Kirksey, Dean Wantland, Puangtip Chaiphibalsarisdi, Mallory O. Johnson, Carmen Portillo, and Inge B. Corless

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Life-course origins of social inequalities in adult immune cell markers of inflammation in developing southern Chinese population: the Guangzhou Biobank Cohort Study, Douglas A. West, Gabriel M. Leung, Chao Q. Jiang, Timothy M. Elwell-Sutton, Wei S. Zhang, Tai H. Lam, Kar K. Cheng, and Mary Schooling

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Trends in Mortality from Septicaemia and Pneumonia with Economic Development: An Age-Period-Cohort Analysis, Irene O.L. Wong, Benjamin J. Cowling, Gabriel M. Leung, and Mary Schooling

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MageComet—web application for harmonizing existing large-scale experiment descriptions, Vincent Xue, Tony Burdett, Margus Lukk, Julie Taylor, Alvis Brazma, and Helen Parkinson

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A Study of the Effect of Heat-Treatment on the Morphology of Nafion Ionomer Dispersion for Use in the Passive Direct Methanol Fuel Cell (DMFC), Ting Yuan, Haifeng Zhang, Zhiqing Zou, Sufia Khatun, Daniel Akins, Yara Adam, and Sophia Suarez

Works from 2011

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The geography of greenhouse gas emissions from within urban areas of India, Jochen Albrecht, Peter Marcotullio, and Andrea Sarzynski

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Cultural Competence in Urban Affairs and Planning, Tom Angotti, Marly Pierre-Louis, Laxmi Ramasubramanian, Sigmund Shipp, and Angela Tovar

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The Online "Supplemental" Workshop: Course Enrichment to Support Novice Teachers' Analysis of Classroom Video, Laura H. Baecher and Shiao-Chuan Kung

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Differences between Trypanosoma brucei gambiense groups 1 and 2 in their resistance to killing by trypanolytic factor 1, Paul Capewell, Nicola J. Veitch, C. Michael R. Turner, Jayne Raper, Matthew Berriman, Stephen L. Hajduk, and Annette MacLeod

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Faculty of 1000 and VIVO: Invisible Colleges and Team Science, John Carey

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How Does Socioeconomic Development Affect COPD Mortality? An Age-Period-Cohort Analysis from a Recently Transitioned Population in China, Jing Chen, Mary Schooling, Janice Mary Johnston, Anthony Johnson Hedley, and Sarah Morag McGhee

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The Impact of Bisphenol A and Triclosan on Immune Parameters in the U.S. Population, NHANES 2003–2006, Erin M. Rees Clayton, Megan Todd, Jennifer B. Dowd, and Allison E. Aiello

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Reactome: a database of reactions, pathways and biological processes, David Croft, Gavin O’Kelly, Guanming Wu, Robin Haw, Marc Gillespie, Lisa Matthews, Michael Caudy, Phani Garapati, Gopal Gopinath, Bijay Jassal, Steven Jupe, Irina Kalatskaya, Shahana S. Mahajan, Bruce May, Nelson Ndegwa, Esther Schmidt, Veronica Shamovsky, Christina Yung, Ewan Birney, Henning Hermjakob, Peter D’Eustachio, and Lincoln Stein

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The (Coming) Social Media Revolution in the Academy, Jessie Daniels and Joe R. Feagin

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Open Access and Liberal Education: A Look at Armenia, Azerbaijan and Georgia, D. Aram Donabedian and John Carey

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Pirates and Librarians: Big Media, Technology and the Role of Liberal Education, D. Aram Donabedian and John Carey

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Cytomegalovirus antibodies in dried blood spots: a minimally invasive method for assessing stress, immune function, and aging, Jennifer B. Dowd, Allison E. Aiello, Laura Chyu, Yuan-yen Huang, and Thomas W. McDade

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Linkage disequilibrium based genotype calling from low-coverage shotgun sequencing reads, Jorge Duitama, Justin Kennedy, Sanjiv Dinakar, Yözen Hernández, Yufeng Wu, and Ion I. Măndoiu

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Insightful Problem Solving in an Asian Elephant, Preston Foerder, Marie Galloway, Tony Barthel, Donald E. Moore III, and Diana Reiss

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Getting Serious About the Prevention of Chronic Diseases, Nicholas Freudenberg and Kenneth Olden

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Management of type 2 diabetes mellitus in the elderly: role of the pharmacist in a multidisciplinary health care team, Samuel Grossman

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Fine Particulate Matter Constituents Associated with Cardiovascular Hospitalizations and Mortality in New York City, Kazuhiko Ito, Robert Mathes, Zev Ross, Arthur Nádas, George Thurston, and Thomas Matte

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Opportunity/Threat Spirals in the U.S. Women's Suffrage and German Anti-Immigration Movements, Roger Karapin

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Age-Related Deficits in Spatial Memory and Hippocampal Spines in Virgin, Female Fischer 344 Rats, Victoria N. Luine, Maureen E. Wallace, and Maya Frankfurt

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Assessing Syndromic Surveillance of Cardiovascular Outcomes from Emergency Department Chief Complaint Data in New York City, Robert W. Mathes, Kazuhiko Ito, and Thomas Matte

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Defying De-Stalinization: Albania’s 1956, Elidor Mehilli

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Public Participation GIS implementation and the transformation of US planning practice, Laxmi Ramasubramanian

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Fabrication of Size-Tunable Metallic Nanoparticles Using Plasmid DNA as a Biomolecular Reactor, Jacopo Samson, Irene Piscopo, Alex Yampolski, Patrick Nahirney, Andrea Parpas, Amit Aggarwal, Raihan Saleh, and Charles Michael Drain

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Parental Death during Childhood and Adult Cardiovascular Risk in a Developing Country: The Guangzhou Biobank Cohort Study, C. Mary Schooling, ChaoQiang Jiang, Tai Hing Lam, WeiSen Zhang, Kar Keung Cheng, and Gabriel M. Leung

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Childhood meat eating and inflammatory markers: The Guangzhou Biobank Cohort Study, Mary Schooling, Chao Q. Jiang, Tai H. Lam, W. S. Zhang, Kar Keung Cheng, and Gabriel M. Leung

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The Association of Tree Pollen Concentration Peaks and Allergy Medication Sales in New York City: 2003–2008, Perry E. Sheffield, Kate R. Weinberger, Kazuhiko Ito, Thomas D. Matte, Robert W. Mathes, Guy S. Robinson, and Patrick L. Kinney

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Sexuality, rights and personhood: tensions in a transnational world, Dina M. Siddiqi

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Methamphetamine Induces Striatal Cell Death Followed by the Generation of New Cells and a Second Round of Cell Death in Mice, I. K. Tulloch, L Afanador, J Zhu, and J. A. Angulo

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Drug Discovery Using Chemical Systems Biology: Weak Inhibition of Multiple Kinases May Contribute to the Anti-Cancer Effect of Nelfinavir, Li Xie, Thomas Evangelidis, Lei Xie, and Philip E. Bourne

Works from 2010

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From Ideal to Practice and Back Again: Beginning Teachers Teaching for Social Justice, Ruchi Agarwal, Shira Epstein, Rachel Oppenheim, Celia Oyler, and Debbie Sonu

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Application Planning, Jochen Albrecht and Clare Davies

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Differential Toxicity of DNA Adducts of Mitomycin C, Jill Bargonetti, Elise Champeil, and Maria Tomasz

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DNA Adducts of Decarbamoyl Mitomycin C Efficiently Kill Cells without Wild-Type p53 Resulting from Proteasome-Mediated Degradation of Checkpoint Protein 1, Ernest K. Boamah, Angelika Brekman, Maria Tomasz, Natura Myeka, Maria E. Figueiredo-Pereira, Senyene Hunter, Joel Meyer, Rahul C. Bhosle, and Jill Bargonetti

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0030-1450_NIR_SpeX, Adam J. Burgasser

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0107+0041_NIR_SpeX, Adam J. Burgasser

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1146+2230_NIR_SpeX, Adam J. Burgasser

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1228-1547_NIR_SpeX, Adam J. Burgasser

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1239+5515_NIR_SpeX, Adam J. Burgasser

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Variability in Avian Eggshell Colour: A Comparative Study of Museum Eggshells, Phillip Cassey, Steven J. Portugal, Golo Maurer, John G. Ewen, Rebecca L. Boulton, Mark E. Hauber, and Tim M. Blackburn

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Cord blood versus age 5 mononuclear cell proliferation on IgE and asthma, Carolyn Chang, Kevin Gauvey-Kern, Alina johnson, Elizabeth A. Kelvin, Ginger L. Chew, Frederica Perera, and Rachel L. Miller

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Drug Off-Target Effects Predicted Using Structural Analysis in the Context of a Metabolic Network Model, Roger L. Chang, Lei Xie, Philip E. Bourne, and Bernhard O. Palsson

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A Multidimensional Strategy to Detect Polypharmacological Targets in the Absence of Structural and Sequence Homology, Jacob D. Durrant, Rommie E. Amaro, Lei Xie, Michael D. Urbaniak, Michael A. J. Ferguson, Antti Haapalainen, Zhijun Chen, Anne Marie Di Guilmi, Frank Wunder, Philip E. Bourne, and J. Andrew McCammon

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My Name and My Face, Stuart Ewen

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Pre-exposure Prophylaxis State of the Science: Empirical Analogies for Research and Implementation, Sarit A. Golub, Don Operario, and Pamina M. Gorbach

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The Mycobacterium tuberculosis Drugome and Its Polypharmacological Implications, Sarah L. Kinnings, Li Xie, Kingston H. Fung, Richard M. Jackson, Lei Xie, and Phillip e. Bourne

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Ectopic T Cell Receptor-α Locus Control Region Activity in B Cells Is Suppressed by Direct Linkage to Two Flanking Genes at Once, Stefan Knirr, Janette Gomos-Klein, Blanca E. Andino, Faith Harrow, Karl F. Erhard, Damian Kovalovsky, Derek B. Sant'Angelo, and Benjamin D. Ortiz

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A Novel TCR Transgenic Model Reveals That Negative Selection Involves an Immediate, Bim-Dependent Pathway and a Delayed, Bim-Independent Pathway, Damian Kovalovsky, Mark Pezzano, Benjamin D. Ortiz, and Derek B. Sant'Angelo

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Introducing a multi-site program for early diagnosis of HIV infection among HIV-exposed infants in Tanzania, Harriet Nuwagaba-Biribonwoha, Bazghina Werq-Semo, Aziz Abdallah, Amy Cunningham, John G. Gamaliel, Sevestine Mtunga, Victoria Nankabirwa, Isaya Malisa, Luis F. Gonzalez, Charles Massambu, Denis Nash, Jessica Justman, and Elaine J. Abrams

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“Did You Call Me?” 5-Month-Old Infants Own Name Guides Their Attention, Eugenio Parise, Angela D. Friederici, and Tricia Striano

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Dilemmas in Contemporary Planning and State of the Practice of PPGIS, Laxmi Ramasubramanian

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Sex partnerships, health, and social risks of young men leaving jail: analyzing data from a randomized controlled trial, Megha Ramaswamy and Nicholas Freudenberg

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SMAP-WS: a parallel web service for structural proteome-wide ligand-binding site comparison, Jingyuan Ren, Lei Xie, Wilfred W. Li, and Philip E. Bourne

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A Richer and More Diverse Future for Cell Biology, Sandra L. Schmid, Molly Carnes, Ursula Goodenough, Nancy Hopkins, Phoebe Leboy, Sandra Masur, and Virginia Valian

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A Multifactorial Mechanism in the Superior Antimalarial Activity of α-C-GalCer, John Schmieg, Guangli Yang, Richard W. Franck, and Moriya Tsuji

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LIM-domain proteins TRIP6 and LPP associate with shelterin to mediate telomere protection, Samantha A. Sheppard and Diego Loayza

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American First Ladies as Goodwill Ambassadors, Wendy W. Tan

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Impact of resilience enhancing programs on youth surviving the Beslan school siege, Stefan Vetter, Igor Dulaev, Mario Mueller, Robert R. Henley, William T. Gallo, and Zalina Kanukova

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Repair of mitomycin C mono- and interstrand cross-linked DNA adducts by UvrABC: a new model, Mao-wen Weng, Yi Zheng, Vijay P. Jasti, Elise Champeil, Maria Tomasz, Yinsheng Wang, Ashis K. Basu, and Moon-shong Tang

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Impact of insurance status on migraine care in the United States, Andrew Wilper, Steffie Woolhandler, David U. Himmelstein, and Rachel Nardin

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Using Podcasts for Assessing Information Research, Lauren Yannotta, Brian Lym, and Shiao-Chuan Kung

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Consistency and precision of cancer reporting in a multiwave national panel survey, Anna Zajacova, Jennifer Beam Dowd, Robert F. Schoeni, and Robert B. Wallace

Works from 2009

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AccessRI, Sean Almonte, Mark Anders, Kenneth Comia, Matthew Coogan, Jeff Gerlach, Aileen Gorsuch, Michael Porto, Mary Rocco, James Shaw, Michael Wallin, and Laxmi Ramasubramanian

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Egg Eviction Imposes a Recoverable Cost of Virulence in Chicks of a Brood Parasite, Michael G. Anderson, Csaba Moskát, Miklós Bán, Tomáš Grim, Phillip Cassey, and Mark E. Hauber

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Harnessing gene expression to identify the genetic basis of drug resistance, Bo-Juen Chen, Helen C. Causton, Denesy Mancenido, Noel L. Goddard, Ethan O. Perlstein, and Dana Pe'er

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1022+5825_OPT_R-C Spec, Kelle L. Cruz

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0318-3421_NIR_SpeX, Michael C. Cushing

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Cloaked websites: propaganda, cyber-racism and epistemology in the digital era, Jessie Daniels

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Combating Global White Supremacy in the Digital Era, Jessie Daniels

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Methodology Appendix: On the Craft of Sociology in the Digital Era, Jessie Daniels