Publications and Research
Works from 2012
Trends in Mortality from Septicaemia and Pneumonia with Economic Development: An Age-Period-Cohort Analysis, Irene O.L. Wong, Benjamin J. Cowling, Gabriel M. Leung, and Mary Schooling
MageComet—web application for harmonizing existing large-scale experiment descriptions, Vincent Xue, Tony Burdett, Margus Lukk, Julie Taylor, Alvis Brazma, and Helen Parkinson
A Study of the Effect of Heat-Treatment on the Morphology of Nafion Ionomer Dispersion for Use in the Passive Direct Methanol Fuel Cell (DMFC), Ting Yuan, Haifeng Zhang, Zhiqing Zou, Sufia Khatun, Daniel Akins, Yara Adam, and Sophia Suarez
Works from 2011
The geography of greenhouse gas emissions from within urban areas of India, Jochen Albrecht, Peter Marcotullio, and Andrea Sarzynski
Cultural Competence in Urban Affairs and Planning, Tom Angotti, Marly Pierre-Louis, Laxmi Ramasubramanian, Sigmund Shipp, and Angela Tovar
The Online "Supplemental" Workshop: Course Enrichment to Support Novice Teachers' Analysis of Classroom Video, Laura H. Baecher and Shiao-Chuan Kung
Differences between Trypanosoma brucei gambiense groups 1 and 2 in their resistance to killing by trypanolytic factor 1, Paul Capewell, Nicola J. Veitch, C. Michael R. Turner, Jayne Raper, Matthew Berriman, Stephen L. Hajduk, and Annette MacLeod
Faculty of 1000 and VIVO: Invisible Colleges and Team Science, John Carey
How Does Socioeconomic Development Affect COPD Mortality? An Age-Period-Cohort Analysis from a Recently Transitioned Population in China, Jing Chen, Mary Schooling, Janice Mary Johnston, Anthony Johnson Hedley, and Sarah Morag McGhee
The Impact of Bisphenol A and Triclosan on Immune Parameters in the U.S. Population, NHANES 2003–2006, Erin M. Rees Clayton, Megan Todd, Jennifer B. Dowd, and Allison E. Aiello
Reactome: a database of reactions, pathways and biological processes, David Croft, Gavin O’Kelly, Guanming Wu, Robin Haw, Marc Gillespie, Lisa Matthews, Michael Caudy, Phani Garapati, Gopal Gopinath, Bijay Jassal, Steven Jupe, Irina Kalatskaya, Shahana S. Mahajan, Bruce May, Nelson Ndegwa, Esther Schmidt, Veronica Shamovsky, Christina Yung, Ewan Birney, Henning Hermjakob, Peter D’Eustachio, and Lincoln Stein
The (Coming) Social Media Revolution in the Academy, Jessie Daniels and Joe R. Feagin
Open Access and Liberal Education: A Look at Armenia, Azerbaijan and Georgia, D. Aram Donabedian and John Carey
Pirates and Librarians: Big Media, Technology and the Role of Liberal Education, D. Aram Donabedian and John Carey
Cytomegalovirus antibodies in dried blood spots: a minimally invasive method for assessing stress, immune function, and aging, Jennifer B. Dowd, Allison E. Aiello, Laura Chyu, Yuan-yen Huang, and Thomas W. McDade
Linkage disequilibrium based genotype calling from low-coverage shotgun sequencing reads, Jorge Duitama, Justin Kennedy, Sanjiv Dinakar, Yözen Hernández, Yufeng Wu, and Ion I. Măndoiu
Insightful Problem Solving in an Asian Elephant, Preston Foerder, Marie Galloway, Tony Barthel, Donald E. Moore III, and Diana Reiss
Management of type 2 diabetes mellitus in the elderly: role of the pharmacist in a multidisciplinary health care team, Samuel Grossman
Fine Particulate Matter Constituents Associated with Cardiovascular Hospitalizations and Mortality in New York City, Kazuhiko Ito, Robert Mathes, Zev Ross, Arthur Nádas, George Thurston, and Thomas Matte
Opportunity/Threat Spirals in the U.S. Women's Suffrage and German Anti-Immigration Movements, Roger Karapin
Age-Related Deficits in Spatial Memory and Hippocampal Spines in Virgin, Female Fischer 344 Rats, Victoria N. Luine, Maureen E. Wallace, and Maya Frankfurt
Assessing Syndromic Surveillance of Cardiovascular Outcomes from Emergency Department Chief Complaint Data in New York City, Robert W. Mathes, Kazuhiko Ito, and Thomas Matte
Defying De-Stalinization: Albania’s 1956, Elidor Mehilli
Public Participation GIS implementation and the transformation of US planning practice, Laxmi Ramasubramanian
Fabrication of Size-Tunable Metallic Nanoparticles Using Plasmid DNA as a Biomolecular Reactor, Jacopo Samson, Irene Piscopo, Alex Yampolski, Patrick Nahirney, Andrea Parpas, Amit Aggarwal, Raihan Saleh, and Charles Michael Drain
Parental Death during Childhood and Adult Cardiovascular Risk in a Developing Country: The Guangzhou Biobank Cohort Study, C. Mary Schooling, ChaoQiang Jiang, Tai Hing Lam, WeiSen Zhang, Kar Keung Cheng, and Gabriel M. Leung
Childhood meat eating and inflammatory markers: The Guangzhou Biobank Cohort Study, Mary Schooling, Chao Q. Jiang, Tai H. Lam, W. S. Zhang, Kar Keung Cheng, and Gabriel M. Leung
The Association of Tree Pollen Concentration Peaks and Allergy Medication Sales in New York City: 2003–2008, Perry E. Sheffield, Kate R. Weinberger, Kazuhiko Ito, Thomas D. Matte, Robert W. Mathes, Guy S. Robinson, and Patrick L. Kinney
Sexuality, rights and personhood: tensions in a transnational world, Dina M. Siddiqi
Formalizing Reusable Aspect-oriented Concurrency Control, Neelam Soundarajan, Derek Bronish, and Raffi T. Khatchadourian
Methamphetamine Induces Striatal Cell Death Followed by the Generation of New Cells and a Second Round of Cell Death in Mice, I. K. Tulloch, L Afanador, J Zhu, and J. A. Angulo
Drug Discovery Using Chemical Systems Biology: Weak Inhibition of Multiple Kinases May Contribute to the Anti-Cancer Effect of Nelfinavir, Li Xie, Thomas Evangelidis, Lei Xie, and Philip E. Bourne
Works from 2010
From Ideal to Practice and Back Again: Beginning Teachers Teaching for Social Justice, Ruchi Agarwal, Shira Epstein, Rachel Oppenheim, Celia Oyler, and Debbie Sonu
Application Planning, Jochen Albrecht and Clare Davies
Differential Toxicity of DNA Adducts of Mitomycin C, Jill Bargonetti, Elise Champeil, and Maria Tomasz
DNA Adducts of Decarbamoyl Mitomycin C Efficiently Kill Cells without Wild-Type p53 Resulting from Proteasome-Mediated Degradation of Checkpoint Protein 1, Ernest K. Boamah, Angelika Brekman, Maria Tomasz, Natura Myeka, Maria E. Figueiredo-Pereira, Senyene Hunter, Joel Meyer, Rahul C. Bhosle, and Jill Bargonetti
0030-1450_NIR_SpeX, Adam J. Burgasser
0107+0041_NIR_SpeX, Adam J. Burgasser
1146+2230_NIR_SpeX, Adam J. Burgasser
1228-1547_NIR_SpeX, Adam J. Burgasser
1239+5515_NIR_SpeX, Adam J. Burgasser
Variability in Avian Eggshell Colour: A Comparative Study of Museum Eggshells, Phillip Cassey, Steven J. Portugal, Golo Maurer, John G. Ewen, Rebecca L. Boulton, Mark E. Hauber, and Tim M. Blackburn
Cord blood versus age 5 mononuclear cell proliferation on IgE and asthma, Carolyn Chang, Kevin Gauvey-Kern, Alina johnson, Elizabeth A. Kelvin, Ginger L. Chew, Frederica Perera, and Rachel L. Miller
Drug Off-Target Effects Predicted Using Structural Analysis in the Context of a Metabolic Network Model, Roger L. Chang, Lei Xie, Philip E. Bourne, and Bernhard O. Palsson
A Multidimensional Strategy to Detect Polypharmacological Targets in the Absence of Structural and Sequence Homology, Jacob D. Durrant, Rommie E. Amaro, Lei Xie, Michael D. Urbaniak, Michael A. J. Ferguson, Antti Haapalainen, Zhijun Chen, Anne Marie Di Guilmi, Frank Wunder, Philip E. Bourne, and J. Andrew McCammon
My Name and My Face, Stuart Ewen
Pre-exposure Prophylaxis State of the Science: Empirical Analogies for Research and Implementation, Sarit A. Golub, Don Operario, and Pamina M. Gorbach
Enumeration Refactoring: A Tool for Automatically Converting Java Constants to Enumerated Types, Raffi T. Khatchadourian and Benjamin Muskalla
The Mycobacterium tuberculosis Drugome and Its Polypharmacological Implications, Sarah L. Kinnings, Li Xie, Kingston H. Fung, Richard M. Jackson, Lei Xie, and Phillip e. Bourne
Ectopic T Cell Receptor-α Locus Control Region Activity in B Cells Is Suppressed by Direct Linkage to Two Flanking Genes at Once, Stefan Knirr, Janette Gomos-Klein, Blanca E. Andino, Faith Harrow, Karl F. Erhard, Damian Kovalovsky, Derek B. Sant'Angelo, and Benjamin D. Ortiz
A Novel TCR Transgenic Model Reveals That Negative Selection Involves an Immediate, Bim-Dependent Pathway and a Delayed, Bim-Independent Pathway, Damian Kovalovsky, Mark Pezzano, Benjamin D. Ortiz, and Derek B. Sant'Angelo
Introducing a multi-site program for early diagnosis of HIV infection among HIV-exposed infants in Tanzania, Harriet Nuwagaba-Biribonwoha, Bazghina Werq-Semo, Aziz Abdallah, Amy Cunningham, John G. Gamaliel, Sevestine Mtunga, Victoria Nankabirwa, Isaya Malisa, Luis F. Gonzalez, Charles Massambu, Denis Nash, Jessica Justman, and Elaine J. Abrams
“Did You Call Me?” 5-Month-Old Infants Own Name Guides Their Attention, Eugenio Parise, Angela D. Friederici, and Tricia Striano
Dilemmas in Contemporary Planning and State of the Practice of PPGIS, Laxmi Ramasubramanian
SMAP-WS: a parallel web service for structural proteome-wide ligand-binding site comparison, Jingyuan Ren, Lei Xie, Wilfred W. Li, and Philip E. Bourne
A Richer and More Diverse Future for Cell Biology, Sandra L. Schmid, Molly Carnes, Ursula Goodenough, Nancy Hopkins, Phoebe Leboy, Sandra Masur, and Virginia Valian
A Multifactorial Mechanism in the Superior Antimalarial Activity of α-C-GalCer, John Schmieg, Guangli Yang, Richard W. Franck, and Moriya Tsuji
LIM-domain proteins TRIP6 and LPP associate with shelterin to mediate telomere protection, Samantha A. Sheppard and Diego Loayza
American First Ladies as Goodwill Ambassadors, Wendy W. Tan
Impact of resilience enhancing programs on youth surviving the Beslan school siege, Stefan Vetter, Igor Dulaev, Mario Mueller, Robert R. Henley, William T. Gallo, and Zalina Kanukova
Repair of mitomycin C mono- and interstrand cross-linked DNA adducts by UvrABC: a new model, Mao-wen Weng, Yi Zheng, Vijay P. Jasti, Elise Champeil, Maria Tomasz, Yinsheng Wang, Ashis K. Basu, and Moon-shong Tang
Impact of insurance status on migraine care in the United States, Andrew Wilper, Steffie Woolhandler, David U. Himmelstein, and Rachel Nardin
Using Podcasts for Assessing Information Research, Lauren Yannotta, Brian Lym, and Shiao-Chuan Kung
Consistency and precision of cancer reporting in a multiwave national panel survey, Anna Zajacova, Jennifer Beam Dowd, Robert F. Schoeni, and Robert B. Wallace
Works from 2009
AccessRI, Sean Almonte, Mark Anders, Kenneth Comia, Matthew Coogan, Jeff Gerlach, Aileen Gorsuch, Michael Porto, Mary Rocco, James Shaw, Michael Wallin, and Laxmi Ramasubramanian
Egg Eviction Imposes a Recoverable Cost of Virulence in Chicks of a Brood Parasite, Michael G. Anderson, Csaba Moskát, Miklós Bán, Tomáš Grim, Phillip Cassey, and Mark E. Hauber
Harnessing gene expression to identify the genetic basis of drug resistance, Bo-Juen Chen, Helen C. Causton, Denesy Mancenido, Noel L. Goddard, Ethan O. Perlstein, and Dana Pe'er
1022+5825_OPT_R-C Spec, Kelle L. Cruz
0318-3421_NIR_SpeX, Michael C. Cushing
Cloaked websites: propaganda, cyber-racism and epistemology in the digital era, Jessie Daniels
Combating Global White Supremacy in the Digital Era, Jessie Daniels
Methodology Appendix: On the Craft of Sociology in the Digital Era, Jessie Daniels
Synergies and Tensions between Rural Social Movements and Professional Researchers, Marc Edelman
Contributing Factors to Pointcut Fragility, Phil Greenwood, Awais Rashid, and Raffi T. Khatchadourian
Cooperation between a Coenzyme A-Independent Stand-Alone Initiation Module and an Iterative Type I Polyketide Synthase during Synthesis of Mycobacterial Phenolic Glycolipids, Weiguo He, Clifford E. Soll, Sivagami Sundaram Chavadi, Guangtao Zhang, J. David Warren, and Luis E. N. Quadri
Correlating Molecular Phylogeny with Venom Apparatus Occurrence in Panamic Auger Snails (Terebridae), Mandë Holford, Nicolas Puillandre, Maria Vittoria Modica, Maren Watkins, Rachel Collin, Eldredge Bermingham, and Baldomero M. Olivera
A randomised-controlled trial of two educational modes for undergraduate evidence-based medicine learning in Asia, Janice M. Johnston, Mary Schooling, and Gabriel M. Leung
Pointcut Rejuvenation: Recovering Pointcut Expressions in Evolving Aspect-Oriented Software, Raffi T. Khatchadourian, Phil Greenwood, Awais Rashid, and Guoqing Harry Xu
Teaching a Foreign Language with Video Podcast Assignments: Examples from an American Sign Language Course, Shiao-Chuan Kung and Elaine Gale
A Role for the IgH Intronic Enhancer E mu in Enforcing Allelic Exclusion, Fubin Li and Laurel A. Eckhardt
Reactome knowledgebase of human biological pathways and processes, Lisa Matthews, Gopal Gopinath, Marc Gillespie, Michael Caudy, David Croft, Bernard de Bono, Phani Garapati, Jill Hemish, Henning Hermjakob, Bijay Jassal, Alex Kanapin, Suzanna Lewis, Shahana S. Mahajan, Bruce May, Esther Schmidt, Imre Vastrik, Guanming Wu, Ewan Birney, Lincoln Stein, and Peter D’Eustachio
In Vivo Colocalisation of oskar mRNA and Trans-Acting Proteins Revealed by Quantitative Imaging of the Drosophila Oocyte, Musa M. Mhlanga, Diana P. Bratu, Auguste Genovesio, Agata Rybarska, Nicolas Chenouard, Ulf Nehrbass, and Jean-Christophe Olivo-Marin
Academic Library Services for Users with Developmental Disabilities: Partnership of Access and Syracuse University Libraries, Adina Mulliken and Ann Atkins
Controlling the Environment: the Australian phytotron and postcolonial science, David Munns
Subchronic infusion of the product of inflammation prostaglandin J2 models sporadic Parkinson's disease in mice, Sha-Ron Pierre, Marijke AM Lemmens, and Maria E. Figueiredo-Pereira
Evaluating the Effectiveness of Widely Available 3-D Visualization Tools in Support of Public Participation, Laxmi Ramasubramanian, Jennifer L. Weeks, and Tim Case
0829+2646_NIR_SpeX, John T. Rayner
1655-0823_NIR_SpeX, John T. Rayner
Alcohol and cardio-respiratory deaths in Chinese: a population-based case-control study of 32,462 older Hong Kong, Mary Schooling, Tai Hing Lam, Sai Yin Ho, Yao He, Kwok Hang Mak, and Gabriel M. Leung
Unexpected Events in Interstate Wars, Zachary C. Shirkey
Trust in the Balance: Asymmetric Information, Commitment Problems and Balancing Behavior, Zachary Shirkey and Ivan Savic
Re-Visioning into Third Space: Autobiographies on Losing Home-and-Homeland, Debbie Sonu and Seungho Moon
Specifying Reusable Aspects, Neelam Soundarajan and Raffi T. Khatchadourian
Optimizing Taq Polymerase Concentration for Improved Signal-to-Noise in the Broad Range Detection of Low Abundance Bacteria, Rudolph Spangler, Noel L. Goddard, and David S. Thaler
Interpretation of Absorption Bands in Airborne Hyperspectral Radiance Data, Karl H. Szekielda, Jeffrey H. Bowles, David B. Gillis, and W. David Miller
Nowhere to go: How stigma limits the options of female drug users after release from jail, Juliana van Olphen, Michele J. Eliason, Nicholas Freudenberg, and Nicholas Freudenberg
Works from 2008
Forgetting the Subject, Christa Davis Acampora
A Requirement List for Geo-ontology Tools, Jochen Albrecht
Ferry Parking and Landside Access Study: implementing public outreach and impact assessment, Jochen Albrecht, Stephanie Camay, Laxmi Ramasubramanian, Brandon Derman, Eric Bohn, William Milczarski, Maria Boile, and Sotiris Theofanis
Geo-Ontology Tools – the missing link, Jochen Albrecht, Laxmi Ramasubramanian, and Brandon Derman