Publications and Research

 

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Works from 2011

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How Does Socioeconomic Development Affect COPD Mortality? An Age-Period-Cohort Analysis from a Recently Transitioned Population in China, Jing Chen, Mary Schooling, Janice Mary Johnston, Anthony Johnson Hedley, and Sarah Morag McGhee

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The Impact of Bisphenol A and Triclosan on Immune Parameters in the U.S. Population, NHANES 2003–2006, Erin M. Rees Clayton, Megan Todd, Jennifer B. Dowd, and Allison E. Aiello

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Reactome: a database of reactions, pathways and biological processes, David Croft, Gavin O’Kelly, Guanming Wu, Robin Haw, Marc Gillespie, Lisa Matthews, Michael Caudy, Phani Garapati, Gopal Gopinath, Bijay Jassal, Steven Jupe, Irina Kalatskaya, Shahana S. Mahajan, Bruce May, Nelson Ndegwa, Esther Schmidt, Veronica Shamovsky, Christina Yung, Ewan Birney, Henning Hermjakob, Peter D’Eustachio, and Lincoln Stein

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The (Coming) Social Media Revolution in the Academy, Jessie Daniels and Joe R. Feagin

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Open Access and Liberal Education: A Look at Armenia, Azerbaijan and Georgia, D. Aram Donabedian and John Carey

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Pirates and Librarians: Big Media, Technology and the Role of Liberal Education, D. Aram Donabedian and John Carey

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Cytomegalovirus antibodies in dried blood spots: a minimally invasive method for assessing stress, immune function, and aging, Jennifer B. Dowd, Allison E. Aiello, Laura Chyu, Yuan-yen Huang, and Thomas W. McDade

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Linkage disequilibrium based genotype calling from low-coverage shotgun sequencing reads, Jorge Duitama, Justin Kennedy, Sanjiv Dinakar, Yözen Hernández, Yufeng Wu, and Ion I. Măndoiu

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Insightful Problem Solving in an Asian Elephant, Preston Foerder, Marie Galloway, Tony Barthel, Donald E. Moore III, and Diana Reiss

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Management of type 2 diabetes mellitus in the elderly: role of the pharmacist in a multidisciplinary health care team, Samuel Grossman

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Fine Particulate Matter Constituents Associated with Cardiovascular Hospitalizations and Mortality in New York City, Kazuhiko Ito, Robert Mathes, Zev Ross, Arthur Nádas, George Thurston, and Thomas Matte

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Opportunity/Threat Spirals in the U.S. Women's Suffrage and German Anti-Immigration Movements, Roger Karapin

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Age-Related Deficits in Spatial Memory and Hippocampal Spines in Virgin, Female Fischer 344 Rats, Victoria N. Luine, Maureen E. Wallace, and Maya Frankfurt

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Assessing Syndromic Surveillance of Cardiovascular Outcomes from Emergency Department Chief Complaint Data in New York City, Robert W. Mathes, Kazuhiko Ito, and Thomas Matte

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Defying De-Stalinization: Albania’s 1956, Elidor Mehilli

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Public Participation GIS implementation and the transformation of US planning practice, Laxmi Ramasubramanian

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Fabrication of Size-Tunable Metallic Nanoparticles Using Plasmid DNA as a Biomolecular Reactor, Jacopo Samson, Irene Piscopo, Alex Yampolski, Patrick Nahirney, Andrea Parpas, Amit Aggarwal, Raihan Saleh, and Charles Michael Drain

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Parental Death during Childhood and Adult Cardiovascular Risk in a Developing Country: The Guangzhou Biobank Cohort Study, C. Mary Schooling, ChaoQiang Jiang, Tai Hing Lam, WeiSen Zhang, Kar Keung Cheng, and Gabriel M. Leung

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Childhood meat eating and inflammatory markers: The Guangzhou Biobank Cohort Study, Mary Schooling, Chao Q. Jiang, Tai H. Lam, W. S. Zhang, Kar Keung Cheng, and Gabriel M. Leung

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The Association of Tree Pollen Concentration Peaks and Allergy Medication Sales in New York City: 2003–2008, Perry E. Sheffield, Kate R. Weinberger, Kazuhiko Ito, Thomas D. Matte, Robert W. Mathes, Guy S. Robinson, and Patrick L. Kinney

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Sexuality, rights and personhood: tensions in a transnational world, Dina M. Siddiqi

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Formalizing Reusable Aspect-oriented Concurrency Control, Neelam Soundarajan, Derek Bronish, and Raffi T. Khatchadourian

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Methamphetamine Induces Striatal Cell Death Followed by the Generation of New Cells and a Second Round of Cell Death in Mice, I. K. Tulloch, L Afanador, J Zhu, and J. A. Angulo

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Drug Discovery Using Chemical Systems Biology: Weak Inhibition of Multiple Kinases May Contribute to the Anti-Cancer Effect of Nelfinavir, Li Xie, Thomas Evangelidis, Lei Xie, and Philip E. Bourne

Works from 2010

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From Ideal to Practice and Back Again: Beginning Teachers Teaching for Social Justice, Ruchi Agarwal, Shira Epstein, Rachel Oppenheim, Celia Oyler, and Debbie Sonu

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Application Planning, Jochen Albrecht and Clare Davies

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Differential Toxicity of DNA Adducts of Mitomycin C, Jill Bargonetti, Elise Champeil, and Maria Tomasz

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DNA Adducts of Decarbamoyl Mitomycin C Efficiently Kill Cells without Wild-Type p53 Resulting from Proteasome-Mediated Degradation of Checkpoint Protein 1, Ernest K. Boamah, Angelika Brekman, Maria Tomasz, Natura Myeka, Maria E. Figueiredo-Pereira, Senyene Hunter, Joel Meyer, Rahul C. Bhosle, and Jill Bargonetti

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0030-1450_NIR_SpeX, Adam J. Burgasser

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0107+0041_NIR_SpeX, Adam J. Burgasser

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1146+2230_NIR_SpeX, Adam J. Burgasser

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1228-1547_NIR_SpeX, Adam J. Burgasser

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1239+5515_NIR_SpeX, Adam J. Burgasser

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Variability in Avian Eggshell Colour: A Comparative Study of Museum Eggshells, Phillip Cassey, Steven J. Portugal, Golo Maurer, John G. Ewen, Rebecca L. Boulton, Mark E. Hauber, and Tim M. Blackburn

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Cord blood versus age 5 mononuclear cell proliferation on IgE and asthma, Carolyn Chang, Kevin Gauvey-Kern, Alina johnson, Elizabeth A. Kelvin, Ginger L. Chew, Frederica Perera, and Rachel L. Miller

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Drug Off-Target Effects Predicted Using Structural Analysis in the Context of a Metabolic Network Model, Roger L. Chang, Lei Xie, Philip E. Bourne, and Bernhard O. Palsson

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A Multidimensional Strategy to Detect Polypharmacological Targets in the Absence of Structural and Sequence Homology, Jacob D. Durrant, Rommie E. Amaro, Lei Xie, Michael D. Urbaniak, Michael A. J. Ferguson, Antti Haapalainen, Zhijun Chen, Anne Marie Di Guilmi, Frank Wunder, Philip E. Bourne, and J. Andrew McCammon

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My Name and My Face, Stuart Ewen

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Pre-exposure Prophylaxis State of the Science: Empirical Analogies for Research and Implementation, Sarit A. Golub, Don Operario, and Pamina M. Gorbach

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Enumeration Refactoring: A Tool for Automatically Converting Java Constants to Enumerated Types, Raffi T. Khatchadourian and Benjamin Muskalla

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The Mycobacterium tuberculosis Drugome and Its Polypharmacological Implications, Sarah L. Kinnings, Li Xie, Kingston H. Fung, Richard M. Jackson, Lei Xie, and Phillip e. Bourne

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Ectopic T Cell Receptor-α Locus Control Region Activity in B Cells Is Suppressed by Direct Linkage to Two Flanking Genes at Once, Stefan Knirr, Janette Gomos-Klein, Blanca E. Andino, Faith Harrow, Karl F. Erhard, Damian Kovalovsky, Derek B. Sant'Angelo, and Benjamin D. Ortiz

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A Novel TCR Transgenic Model Reveals That Negative Selection Involves an Immediate, Bim-Dependent Pathway and a Delayed, Bim-Independent Pathway, Damian Kovalovsky, Mark Pezzano, Benjamin D. Ortiz, and Derek B. Sant'Angelo

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Introducing a multi-site program for early diagnosis of HIV infection among HIV-exposed infants in Tanzania, Harriet Nuwagaba-Biribonwoha, Bazghina Werq-Semo, Aziz Abdallah, Amy Cunningham, John G. Gamaliel, Sevestine Mtunga, Victoria Nankabirwa, Isaya Malisa, Luis F. Gonzalez, Charles Massambu, Denis Nash, Jessica Justman, and Elaine J. Abrams

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“Did You Call Me?” 5-Month-Old Infants Own Name Guides Their Attention, Eugenio Parise, Angela D. Friederici, and Tricia Striano

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Dilemmas in Contemporary Planning and State of the Practice of PPGIS, Laxmi Ramasubramanian

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SMAP-WS: a parallel web service for structural proteome-wide ligand-binding site comparison, Jingyuan Ren, Lei Xie, Wilfred W. Li, and Philip E. Bourne

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A Richer and More Diverse Future for Cell Biology, Sandra L. Schmid, Molly Carnes, Ursula Goodenough, Nancy Hopkins, Phoebe Leboy, Sandra Masur, and Virginia Valian

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A Multifactorial Mechanism in the Superior Antimalarial Activity of α-C-GalCer, John Schmieg, Guangli Yang, Richard W. Franck, and Moriya Tsuji

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LIM-domain proteins TRIP6 and LPP associate with shelterin to mediate telomere protection, Samantha A. Sheppard and Diego Loayza

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American First Ladies as Goodwill Ambassadors, Wendy W. Tan

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Impact of resilience enhancing programs on youth surviving the Beslan school siege, Stefan Vetter, Igor Dulaev, Mario Mueller, Robert R. Henley, William T. Gallo, and Zalina Kanukova

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Repair of mitomycin C mono- and interstrand cross-linked DNA adducts by UvrABC: a new model, Mao-wen Weng, Yi Zheng, Vijay P. Jasti, Elise Champeil, Maria Tomasz, Yinsheng Wang, Ashis K. Basu, and Moon-shong Tang

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Impact of insurance status on migraine care in the United States, Andrew Wilper, Steffie Woolhandler, David U. Himmelstein, and Rachel Nardin

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Using Podcasts for Assessing Information Research, Lauren Yannotta, Brian Lym, and Shiao-Chuan Kung

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Consistency and precision of cancer reporting in a multiwave national panel survey, Anna Zajacova, Jennifer Beam Dowd, Robert F. Schoeni, and Robert B. Wallace

Works from 2009

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AccessRI, Sean Almonte, Mark Anders, Kenneth Comia, Matthew Coogan, Jeff Gerlach, Aileen Gorsuch, Michael Porto, Mary Rocco, James Shaw, Michael Wallin, and Laxmi Ramasubramanian

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Egg Eviction Imposes a Recoverable Cost of Virulence in Chicks of a Brood Parasite, Michael G. Anderson, Csaba Moskát, Miklós Bán, Tomáš Grim, Phillip Cassey, and Mark E. Hauber

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Harnessing gene expression to identify the genetic basis of drug resistance, Bo-Juen Chen, Helen C. Causton, Denesy Mancenido, Noel L. Goddard, Ethan O. Perlstein, and Dana Pe'er

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1022+5825_OPT_R-C Spec, Kelle L. Cruz

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0318-3421_NIR_SpeX, Michael C. Cushing

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Cloaked websites: propaganda, cyber-racism and epistemology in the digital era, Jessie Daniels

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Combating Global White Supremacy in the Digital Era, Jessie Daniels

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Methodology Appendix: On the Craft of Sociology in the Digital Era, Jessie Daniels

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Synergies and Tensions between Rural Social Movements and Professional Researchers, Marc Edelman

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Contributing Factors to Pointcut Fragility, Phil Greenwood, Awais Rashid, and Raffi T. Khatchadourian

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Cooperation between a Coenzyme A-Independent Stand-Alone Initiation Module and an Iterative Type I Polyketide Synthase during Synthesis of Mycobacterial Phenolic Glycolipids, Weiguo He, Clifford E. Soll, Sivagami Sundaram Chavadi, Guangtao Zhang, J. David Warren, and Luis E. N. Quadri

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Correlating Molecular Phylogeny with Venom Apparatus Occurrence in Panamic Auger Snails (Terebridae), Mandë Holford, Nicolas Puillandre, Maria Vittoria Modica, Maren Watkins, Rachel Collin, Eldredge Bermingham, and Baldomero M. Olivera

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A randomised-controlled trial of two educational modes for undergraduate evidence-based medicine learning in Asia, Janice M. Johnston, Mary Schooling, and Gabriel M. Leung

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Pointcut Rejuvenation: Recovering Pointcut Expressions in Evolving Aspect-Oriented Software, Raffi T. Khatchadourian, Phil Greenwood, Awais Rashid, and Guoqing Harry Xu

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Teaching a Foreign Language with Video Podcast Assignments: Examples from an American Sign Language Course, Shiao-Chuan Kung and Elaine Gale

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A Role for the IgH Intronic Enhancer E mu in Enforcing Allelic Exclusion, Fubin Li and Laurel A. Eckhardt

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Reactome knowledgebase of human biological pathways and processes, Lisa Matthews, Gopal Gopinath, Marc Gillespie, Michael Caudy, David Croft, Bernard de Bono, Phani Garapati, Jill Hemish, Henning Hermjakob, Bijay Jassal, Alex Kanapin, Suzanna Lewis, Shahana S. Mahajan, Bruce May, Esther Schmidt, Imre Vastrik, Guanming Wu, Ewan Birney, Lincoln Stein, and Peter D’Eustachio

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In Vivo Colocalisation of oskar mRNA and Trans-Acting Proteins Revealed by Quantitative Imaging of the Drosophila Oocyte, Musa M. Mhlanga, Diana P. Bratu, Auguste Genovesio, Agata Rybarska, Nicolas Chenouard, Ulf Nehrbass, and Jean-Christophe Olivo-Marin

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Academic Library Services for Users with Developmental Disabilities: Partnership of Access and Syracuse University Libraries, Adina Mulliken and Ann Atkins

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Controlling the Environment: the Australian phytotron and postcolonial science, David Munns

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Subchronic infusion of the product of inflammation prostaglandin J2 models sporadic Parkinson's disease in mice, Sha-Ron Pierre, Marijke AM Lemmens, and Maria E. Figueiredo-Pereira

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Evaluating the Effectiveness of Widely Available 3-D Visualization Tools in Support of Public Participation, Laxmi Ramasubramanian, Jennifer L. Weeks, and Tim Case

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0829+2646_NIR_SpeX, John T. Rayner

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1655-0823_NIR_SpeX, John T. Rayner

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Alcohol and cardio-respiratory deaths in Chinese: a population-based case-control study of 32,462 older Hong Kong, Mary Schooling, Tai Hing Lam, Sai Yin Ho, Yao He, Kwok Hang Mak, and Gabriel M. Leung

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Unexpected Events in Interstate Wars, Zachary C. Shirkey

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Trust in the Balance: Asymmetric Information, Commitment Problems and Balancing Behavior, Zachary Shirkey and Ivan Savic

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Re-Visioning into Third Space: Autobiographies on Losing Home-and-Homeland, Debbie Sonu and Seungho Moon

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Specifying Reusable Aspects, Neelam Soundarajan and Raffi T. Khatchadourian

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Optimizing Taq Polymerase Concentration for Improved Signal-to-Noise in the Broad Range Detection of Low Abundance Bacteria, Rudolph Spangler, Noel L. Goddard, and David S. Thaler

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Interpretation of Absorption Bands in Airborne Hyperspectral Radiance Data, Karl H. Szekielda, Jeffrey H. Bowles, David B. Gillis, and W. David Miller

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Nowhere to go: How stigma limits the options of female drug users after release from jail, Juliana van Olphen, Michele J. Eliason, Nicholas Freudenberg, and Nicholas Freudenberg

Works from 2008

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Forgetting the Subject, Christa Davis Acampora

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A Requirement List for Geo-ontology Tools, Jochen Albrecht

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Ferry Parking and Landside Access Study: implementing public outreach and impact assessment, Jochen Albrecht, Stephanie Camay, Laxmi Ramasubramanian, Brandon Derman, Eric Bohn, William Milczarski, Maria Boile, and Sotiris Theofanis

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Geo-Ontology Tools – the missing link, Jochen Albrecht, Laxmi Ramasubramanian, and Brandon Derman

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Blood Collection from the American Horseshoe Crab, Limulus Polyphemus, Peter Armstrong and Mara Conrad

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Ferry Parking and Landside Access Study: Implementing Public Outreach and Impact Assessment, Stephanie Camay, Laxmi Ramasubramanian, Brandon Derman, Eric Bohn, Jochen Albrecht, William Milczarski, Maria Boile, and Sotiris Theofanis

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Race, Civil Rights, and Hate Speech in the Digital Era, Jessie Daniels

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The Impact of Corporate Practices on Health: Implications for Health Policy, Nicholas Freudenberg and Sandro Galea

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Changing Corporate Practices to Reduce Cancer Disparities, Nicholas Freudenberg, Sandro Galea, and Marianne Fahs

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Reframing High School Dropout as a Public Health Issue [Response to Letters], Nicholas Freudenberg and Jessica Ruglis

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Young Infants' Neural Processing of Objects Is Affected by Eye Gaze Direction and Emotional Expression, Stefanie Hoehl, Lisa Wiese, and Tricia Striano

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Birth Weight, Infant Growth, and Childhood Body Mass Index: Hong Kong’s Children of 1997 Birth Cohort, L. L. Hui, Mary Schooling, Shirley Sze Lee Leung, Kwok Hang Mak, Lai Ming Ho, Tai Hing Lam, and Gabriel M. Leung