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Works from 2013

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High Levels of Adherence and Viral Suppression in a Nationally Representative Sample of HIV-Infected Adults on Antiretroviral Therapy for 6, 12 and 18 Months in Rwanda, Batya Elul, Paulin Basinga, Harriet Nuwagaba-Biribonwoha, Suzue Saito, Deborah Horowitz, Denis Nash, Jules Mugabo, Veronicah Mugisha, Etienne Rugigana, Richard Nkunda, and Anita Asiimwe

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Association of neighborhood-level factors with hospitalization for community-associated methicillin-resistant Staphylococcus aureus, New York City, 2006: a multilevel observational study, Amanda M. Farr, Melissa A. Marx, Don Weiss, and Denis Nash

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The impact of Medicare prescription drug coverage on the use of antidementia drugs, Nicole R. Fowler, Yi-Fan Chen, Christiana A. Thurton, Aiju Men, Eric G. Rodriguez, and Julie M. Donohue

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curatedOvarianData: clinically annotated data for the ovarian cancer transcriptome, Benjamin Frederick Ganzfried, Markus Riester, Benjamin Haibe-Kains, Thomas Risch, Svitlana Tyekucheva, Ina Jazic, Xin Victoria Wang, Mahnaz Ahmadifar, Michael J. Birrer, Giovanni Parmigiani, Curtis Huttenhower, and Levi Waldron

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Quantifying Reproducibility in Computational Biology: The Case of the Tuberculosis Drugome, Daniel Garijo, Sarah Kinnings, Li Xie, Lei Xie, Yinliang Zhang, Philip E. Bourne, and Yolanda Gil

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Cladistic analysis of extant and fossil African papionins using craniodental data, Christopher C. Gilbert

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La sátira en Bartolomé Leonardo de Argensola, Adrian Izquierdo

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La traducción del Anacreón castellano de Quevedo en su tiempo, Adrian Izquierdo

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Validity and Reliability of Using a Self-Lavaging Device for Cytology and HPV Testing for Cervical Cancer Screening: Findings from a Pilot Study, Heidi E. Jones, Mahesh M. Mansukhani, Guo-Xia Tong, and Carolyn L. Westhoff

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LIM Protein Ajuba Participates in the Repression of the ATR-Mediated DNA Damage Response, Sampada Kalan, Anastasiya Matveyenko, and Diego Loayza

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Neurophysiological processing of emotion and parenting interact to predict inhibited behavior: an affective-motivational framework, Ellen M. Kessel, Rebecca F. Huselid, Jennifer M. DeCicco, and Tracy A. Dennis

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A Guide to Enterotypes across the Human Body: Meta- Analysis of Microbial Community Structures in Human Microbiome Datasets, Omry Koren, Dan Knights, Antonio Gonzalez, Levi Waldron, Nicola Segata, Rob Knight, Curtis Huttenhower, and Ruth E. Ley

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Evaluating Satellite Products for Precipitation Estimation in Mountain Regions: A Case Study for Nepal, Nir Y. Krakauer, Soni M. Pradhanang, Tarendra Lakhankar, and Ajay K. Jha

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The effectiveness of critical time intervention for abused women and homeless people leaving Dutch shelters: study protocol of two randomised controlled trials, Danielle AM Lako, Renée de Vet, Mariëlle D. Beijersbergen, Daniel B. Herman, Albert M. van Hemert, and Judith RLM Wolf

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Stepwise acquisition of vocal combinatorial capacity in songbirds and human infants, Dina Lipkind, Gary F. Marcus, Douglas Bemis, Kazutoshi Sasahara, Nori Jacoby, Miki Takahashi, Kenta Suzuki, Olga Feher, Primoz Ravbar, Kazuo Okanoya, and Ofer Tchernichovski

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0112+1703_NIR_GNIRS, Michael C. Liu

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2114-2251_NIR_GNIRS, Michael C. Liu

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Exploring epigenetic regulation of fear memory and biomarkers associated with post-traumatic stress disorder, Stephanie A. Maddox, Glenn E. Schafe, and Kerry J. Ressler

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A Naturally-Occurring Histone Acetyltransferase Inhibitor Derived from Garcinia indica Impairs Newly Acquired and Reactivated Fear Memories, Stephanie A. Maddox, Casey S. Watts, Valerie Doyere, and Glenn E. Schafe

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Serum amyloid P inhibits granulocyte adhesion, Anu S. Maharjan, David Roife, Derrick Brazill, and Richard H. Gomer

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Inter- and intra-specific pan-genomes of Borrelia burgdorferi sensu lato: genome stability and adaptive radiation, Emmanuel F. Mongodin, Sherwood R. Casjens, John F. Bruno, Yun Xu, Elliott Franco Drabek, David R. Riley, Brandi L. Cantarel, Pedro E. Pagan, Yozen A. Hernandez, Levy C. Vargas, John J. Dunn, Steven E. Schutzer, Claire M. Fraser, Wei-Gang Qiu, and Benjamin J. Luft

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Multiple Breast Cancer Cell-Lines Derived from a Single Tumor Differ in Their Molecular Characteristics and Tumorigenic Potential, Goar Mosoyan, Chandandeep Nagi, Svetlana Marukian, Avelino Teixeira, Anait Simonian, Lois Resnick-Silverman, Analisa DiFeo, Dean Johnston, Sandra R. Reynolds, Daniel F. Roses, and Arevik Mosoian

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Endogenous Human MDM2-C Is Highly Expressed in Human Cancers and Functions as a p53-Independent Growth Activator, Danielle R. Okoro, Nicoleta Arva, Chong Gao, Alla Polotskaia, Cindy Puente, Melissa Rosso, and Jill Bargonetti

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Factors associated with loss to clinic among HIV patients not yet known to be eligible for antiretroviral therapy (ART) in Mozambique, Rituparna Pati, Maria Lahuerta, Batya Elul, Mie Okamura, Maria Fernanda Alvim, Bruce Schackman, Heejung Bang, Rufino Fernandes, Americo Assan, Josue Lima, and Denis Nash

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An Integrative Framework for Bayesian Variable Selection with Informative Priors for Identifying Genes and Pathways, Bin Peng, Dianwen Zhu, Bradley P. Ander, Xiaoshuai Zhang, Fuzhong Xue, Frank R. Sharp, and Xiaowei Yang

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Associations between the legal context of HIV, perceived social capital, and HIV antiretroviral adherence in North America, J Craig Phillips, Allison Webel, Carol Dawson Rose, Inge B. Corless, Kathleen M. Sullivan, Joachim Voss, Dean Wantland, Kathleen Nokes, John Brion, Wei-Ti Chen, Scholastika Iipinge, Lucille Sanzero Eller, Lynda Tyer-Viola, Marta Rivero-Méndez, Patrice K. Nicholas, Mallory O. Johnson, Mary Maryland, Jeanne Kemppainen, Carmen J. Portillo, and Puangtip Chaiphibalsarisdi

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Anxiety and error monitoring: the importance of motivation and emotion, Greg H. Proudfit, Michael Inzlicht, and Douglas S. Mennin

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A new look at the Dynamic Similarity Hypothesis: the importance of swing phase, David A. Raichlen, Herman Pontzer, and Liza J. Shapiro

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Multiple Chronic Conditions and Limitations in Activities of Daily Living in a Community-Based Sample of Older Adults in New York City, 2009, Nancy L. Ralph, Thelma J. Mielenz, Hilary Parton, Anne-Marie Flatley, and Lorna E. Thorpe

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Effects of Localized Trap-States and Corrugation on Charge Transport in Graphene Nanoribbons, Oleksiy Roslyak, Upali Aparajita, Godfrey Gumbs, and Danhong Huang

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Amino Acids and mTOR Mediate Distinct Metabolic Checkpoints in Mammalian G1 Cell Cycle, Mahesh Saqcena, Deepak Menon, Deven Patel, Suman Mukhopadhyay, Victor Chow, and David A. Foster

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Androgen activity and markers of inflammation among men in NHANES III, Mary Schooling

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The effect of statins on testosterone in men and women, a systematic review and meta-analysis of randomized controlled trials, Mary Schooling, Shiu Lun Au Yeung, Guy Freeman, and Benjamin J. Cowling

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Robust training attenuates TBI-induced deficits in reference and working memory on the radial 8-arm maze, Veronica Sebastian, Aissatou Diallo, Douglas S. F. Ling, and Peter A. Serrano

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Acute Physiological Stress Promotes Clustering of Synaptic Markers and Alters Spine Morphology in the Hippocampus, Veronica Sebastian, Jim Brian Estil, Daniel Chen, Lisa M. Schrott, and Peter A. Serrano

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PKMζ Differentially Utilized between Sexes for Remote Long-Term Spatial Memory, Veronica Sebastian, Tatyana Vergel, Raheela Baig, Lisa M. Schrott, and Peter A. Serrano

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Allometric Scaling and Resource Limitations Model of Tree Heights: Part 1. Model Optimization and Testing over Continental USA, Yuli Shi, Sungho Choi, Xiliang Ni, Sangram Ganguly, Gong Zhang, Hieu V. Duong, Michael A. Lefsky, Marc Simard, Sassan S. Saatchi, Shihyan Lee, Wenge Ni-Meister, Shilong Piao, Chunxiang Cao, Ramakrishna R. Nemani, and Ranga B. Myneni

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Friendship, Education, and Justice Teaching: The Professional Development of Two Teacher-Friends, Debbie Sonu

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Educational Uses for the iPad, Philip G. Swan Jr.

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Grace Ellen McCrann Memorial Lecture: “The Present Defenceless State of the Country”: Gunpowder Plots in Revolutionary South Carolina, Philip G. Swan Jr.

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Age-Period-Cohort Projections of Ischaemic Heart Disease Mortality by Socio-Economic Position in a Rapidly Transitioning Chinese Population, Irene O.L. Won, Benjamin J. Cowling, Gabriel M. Leung, and Mary Schooling

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Multiscale modeling of the causal functional roles of nsSNPs in a genome-wide association study: application to hypoxia, Li Xie, Clara Ng, Thahmina Ali, Raoul Valencia, Barbara L. Ferreira, Vincent Xue, Maliha Tanweer, Dan Zhou, Gabriel G. Haddad, Philip E. Bourne, and Lei Xie

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Testosterone therapy and cardiovascular events among men: a systematic review and meta-analysis of placebo-controlled randomized trials, Lin Xu, Guy Freeman, Benjamin J. Cowling, and C Mary Schooling

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testosterone, cardiovascular, men, trial, Lin Xu, Guy Freeman, Benjamin J. Cowling, and Mary Schooling

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Synergistic Inhibition of Survival, Proliferation, and Migration of U87 Cells with a Combination of LY341495 and Iressa, Zarina Yelskaya, Vangie Carrillo, Ewa Dubisz, Hira Gulzar, Devon Morgan, and Shahana S. Mahajan

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Moderate Alcohol Use and Cardiovascular Disease from Mendelian Randomization, Shiu Lun Au Yeung, Chaoqiang Jiang, Kar Keung Cheng, Benjamin J. Cowling, Bin Liu, Weisen Zhang, Tai Hing Lam, Gabriel M. Leung, and Mary Schooling

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Consumers' Perceptions of Patient-Accessible Electronic Medical Records, Christina Zarcadoolas, Wendy L. Vaughon, Sara J. Czaja, Joslyn Levy, and Maxine L. Rockoff

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A PLSPM-Based Test Statistic for Detecting Gene-Gene Co-Association in Genome-Wide Association Study with Case-Control Design, Xiaoshuai Zhang, Xiaowei Yang, Zhongshang Yuan, Yanxun Liu, Fangyu Li, Bin Peng, Dianwen Zhu, Jinghua Zhao, and Fuzhong Xue

Works from 2012

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Sex and vision II: color appearance of monochromatic lights, Israel Abramov, James Gordon, Olga Feldman, and Alla Chavarga

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Sex & vision I: Spatio-temporal resolution, Israel Abramov, James Gordon, Olga Feldman, and Alla Chavarga

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The geography of greenhouse gas emissions from within urban areas of Asia, Jochen Albrecht, Peter Marcotullio, Andrea Sarzynski, and Niels Schulz

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Risk Factor Detection as a Metric of STARHS Performance for HIV Incidence Surveillance Among Female Sex Workers in Kigali, Rwanda, Sarah L. Braunstein, Janneke H. van de Wijgert, Joseph Vyankandondera, Evelyn Kestelyn, Justin Ntirushwa, and Denis Nash

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Genome Stability of Lyme Disease Spirochetes: Comparative Genomics of Borrelia burgdorferi Plasmids, Sherwood R. Casjens, Emmanuel F. Mongodin, Wei-Gang Qiu, Benjamin J. Luft, Steven E. Schutzer, Eddie B. Gilcrease, Wai Mun Huang, Marija Vujadinovic, John K. Aron, Levy C. Vargas, Sam Freeman, Diana Radune, Janice F. Weidman, George I. Dimitrov, Hoda M. Khouri, Julia E. Sosa, Rebecca A. Halpin, John J. Dunn, and Claire M. Fraser

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Digital Video: Engaging Students in Critical Media Literacy and Community Activism, Jessie Daniels

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Intervention: Reality TV, Whiteness, and Narratives of Addiction, Jessie Daniels

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Transforming Student Engagement Through Documentary and Critical Media Literacy, Jessie Daniels

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The Association between Marital Transitions, Body Mass Index, and Weight: A Review of the Literature, Lauren Dinour, May May Leung, Gina Tripicchio, Sahar Khan, and Ming-Chin Yeh

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Inhibition of Pokeweed Antiviral Protein (PAP) by turnip mosaic virus genome-linked protein (VPg), Artem V. Domashevskiy, Hiroshi Miyoshi, and Dixie J. Goss

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Twenty Years After: Armenian Research Libraries Today, D. Aram Donabedian, John Carey, and Arshak Balayan

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Early Invasion of Brain Parenchyma by African Trypanosomes, Ute Frevert, Alexandru Movila, Olga V. Nikolskaia, Jayne Raper, Zachary B. Mackey, Maha Abdulla, James McKerrow, and Dennis J. Grab

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0047+6803_NIR_SpeX, John E. Gizis

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Attack Rates Assessment of the 2009 Pandemic H1N1 Influenza A in Children and Their Contacts: A Systematic Review and Meta-Analysis, Aharona Glatman-Freedman, Ian Portelli, Susan K. Jacobs, Justin I. Mathew, Jonathan E. Slutzman, Lewis R. Goldfrank, and Silas W. Smith

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What is the predictive power of the colobine protein-to-fiber model and its conservation value?, Jan F. Gogarten, Melissa Guzman, Colin A. Chapman, Aerin L. Jacob, Patrick A. Omeja, and Jessica Rothman

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Lesula: A New Species of Cercopithecus Monkey Endemic to the Democratic Republic of Congo and Implications for Conservation of Congo’s Central Basin, John A. Hart, Kate M. Detwiler, Christopher C. Gilbert, Andrew S. Burrell, James L. Fuller, Maurice Emetshu, Terese B. Hart, Ashley Vosper, Eric J. Sargis, and Anthony J. Tosi

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Utilizing the reaction of degeneration test for individuals with focal paralysis, Thomas J. Holland

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Morph Matters: Aggression Bias in a Polymorphic Sparrow, Brent M. Horton, Mark E. Hauber, and Donna L. Maney

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New Autonomous Motors of Metal-Organic Framework (MOF) Powered by Reorganization of Self-Assembled Peptides at interfaces, Yasuhiro Ikezoe, Gosuke Washino, Takashi Uemura, Susumu Kitagawa, and Hiroshi Matsui

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Fellow travellers: a concordance of colonization patterns between mice and men in the North Atlantic region, E P. Jones, K Skirnisson, T H. McGovern, MTP Gilbert, E Willerslev, and J B. Searle

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Climate Policy Outcomes in Germany: Environmental Performance and Environmental Damage in Eleven Policy Areas, Roger Karapin

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Explaining Success and Failure in Climate Policies: Developing Theory through German Case Studies, Roger Karapin

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Pointcut Rejuvenation: Recovering Pointcut Expressions in Evolving Aspect-Oriented Software, Raffi T. Khatchadourian, Phil Greenwood, Awais Rashid, and Harry Xu

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Understanding and Addressing Unique Needs of Diabetes in Asian Americans, Native Hawaiians, and Pacific Islanders, George L. King, Marguerite J. McNeely, Lorna E. Thorpe, Marjorie L.M. Mau, Jocelyn Ko, Lenna L. Liu, Angela Sun, William C. Hsu, and Edward A. Chow

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Association of Adherence Support and Outreach Services with Total Attrition, Loss to Follow-Up, and Death among ART Patients in Sub-Saharan Africa, Matthew R. Lamb, Wafaa M. El-Sadr, Elvin Geng, and Denis Nash

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Intervening to Reduce Sedentary Behaviors and Childhood Obesity among School-Age Youth: A Systematic Review of Randomized Trials, May May Leung, Alen Agaronov, Kateryna Grytsenko, and Ming-Chin Yeh

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Effect of axonal micro-tubules on the morphology of retinal nerve fibers studied by second-harmonic generation, Hyungsik Lim and John Danias

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The Role of Dairy Products and Milk in Adolescent Obesity: Evidence from Hong Kong’s ‘‘Children of 1997’’ Birth Cohort, Shi Lin Lin, Marie Tarrant, Lai Ling Hui, Man Ki Kwok, Tai Hing Lam, Gabriel M. Leung, and Mary Schooling

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Evidence for a Grooming Claw in a North American Adapiform Primate: Implications for Anthropoid Origins, Stephanie Maiolino, Doug M. Boyer, Jonathan I. Bloch, Christopher C. Gilbert, and Joseph Groenke

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The Socialist Design: Urban Dilemmas in Postwar Europe and the Soviet Union, Elidor Mehilli

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Coordination between proteasome impairment and caspase activation leading to TAU pathology: neuroprotection by cAMP, M. J. Metcalfe, Q. Huang, and Maria E. Figueiredo-Pereira

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Crossing Over…Markov Meets Mendel, Saad Mneimneh

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1112+3548_NIR_SpeX, J. Patience

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Hunter-Gatherer Energetics and Human Obesity, Herman Pontzer, David A. Raichlen, Brian M. Wood, Audax Z. P. Mabulla, Susan B. Racette, and Frank W. Marlowe

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The light-sensitive conductance of melanopsin-expressing Joseph and Hesse cells in amphioxus, Camila Pulido, Gerardo Malagón, Camilo Ferrer, Jun Kui Chen, Juan Manuel Angueyra, Enrico Nasi, and María del Pilar Gomez

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Quantum learning without quantum memory, G. Sentís, J. Calsamiglia, R. Muñoz-Tapia, and E. Bagan

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When and How Many: The Effects of Third Party Joining on Casualties and Duration in Interstate Wars, Zachary Shirkey

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Review of Dan Reiter’s "How Wars End", Zachary C. Shirkey

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An Annotated Bibliography for the Correlates of War Interstate Wars Database, Zachary Shirkey and Alex Weisiger

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Taking Responsibility: The Multiple and Shifting Positions of Social Justice Educators, Debbie Sonu, Rachel Oppenheim, Shira Epstein, and Ruchi Agarwal

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Awareness and Interest in Intrauterine Contraceptive Device Use among HIV-Positive Women in Cape Town, South Africa, Catherine S. Todd, Heidi E. Jones, Tracy C. Garber, Hoviyeh Afnan-Holmes, Helen Woolgar, Linda-Gail Bekker, and Landon Myer

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Competition Between Conjugation and M13 Phage Infection in Escherichia coli in the Absence of Selection Pressure: A Kinetic Study, Zhenmao Wan and Noel L. Goddard

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A cross-sectional description of social capital in an international sample of persons living with HIV/AIDS (PLWH), Allison Webel, J Craig Phillips, Carol Dawson Rose, William L. Holzemer, Wei-Ti Chen, Lynda Tyer-Viola, Marta Rivero-Méndez, Patrice Nicholas, Kathleen Nokes, Jeanne Kemppainen, Elizabeth Sefcik, John Brion, Lucille Eller, Scholastika Iipinge, Kenn Kirksey, Dean Wantland, Puangtip Chaiphibalsarisdi, Mallory O. Johnson, Carmen Portillo, and Inge B. Corless

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Life-course origins of social inequalities in adult immune cell markers of inflammation in developing southern Chinese population: the Guangzhou Biobank Cohort Study, Douglas A. West, Gabriel M. Leung, Chao Q. Jiang, Timothy M. Elwell-Sutton, Wei S. Zhang, Tai H. Lam, Kar K. Cheng, and Mary Schooling

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Trends in Mortality from Septicaemia and Pneumonia with Economic Development: An Age-Period-Cohort Analysis, Irene O.L. Wong, Benjamin J. Cowling, Gabriel M. Leung, and Mary Schooling

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MageComet—web application for harmonizing existing large-scale experiment descriptions, Vincent Xue, Tony Burdett, Margus Lukk, Julie Taylor, Alvis Brazma, and Helen Parkinson

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A Study of the Effect of Heat-Treatment on the Morphology of Nafion Ionomer Dispersion for Use in the Passive Direct Methanol Fuel Cell (DMFC), Ting Yuan, Haifeng Zhang, Zhiqing Zou, Sufia Khatun, Daniel Akins, Yara Adam, and Sophia Suarez

Works from 2011

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The geography of greenhouse gas emissions from within urban areas of India, Jochen Albrecht, Peter Marcotullio, and Andrea Sarzynski

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Cultural Competence in Urban Affairs and Planning, Tom Angotti, Marly Pierre-Louis, Laxmi Ramasubramanian, Sigmund Shipp, and Angela Tovar

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The Online "Supplemental" Workshop: Course Enrichment to Support Novice Teachers' Analysis of Classroom Video, Laura H. Baecher and Shiao-Chuan Kung

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Differences between Trypanosoma brucei gambiense groups 1 and 2 in their resistance to killing by trypanolytic factor 1, Paul Capewell, Nicola J. Veitch, C. Michael R. Turner, Jayne Raper, Matthew Berriman, Stephen L. Hajduk, and Annette MacLeod

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Faculty of 1000 and VIVO: Invisible Colleges and Team Science, John Carey