Publications and Research
Works from 2019
Going Big: A Large-Scale Study on What Big Data Developers Ask, Mehdi Bagherzadeh and Raffi Khatchadourian
Abrogation of Endogenous Glycolipid Antigen Presentation on Myelin-Laden Macrophages by D-Sphingosine Ameliorates the Pathogenesis of Experimental Autoimmune Encephalomyelitis, Yi Ban, Wenjuan Dong, Lixing Zhang, Tian Zhou, Ahmad Sabri Altiti, Khaleel Ali, David R. Mootoo, Victoria A. Biaho, Timothy Hla, Yi Ren, and Xiaojing Ma
Nuclear Tau, p53 and Pin1 Regulate PARN-Mediated Deadenylation and Gene Expression, Jorge Baquero, Sophia Varriano, Martha Ordonez, Pawel Kuczaj, Michael R. Murphy, Gamage Aruggoda, Devon Lundine, Viktoriya Morozova, Ali Elhadi Makki, Alejandra del C. Alonso, and Frida E. Kleiman
Navegando hacia lo desconocido, Yarimar Bonilla
Puerto Rico: Necrópolis, Yarimar Bonilla
The Leaked Texts at the Heart of Puerto Rico’s Massive Protests, Yarimar Bonilla
Minimalistic supramolecular proteoglycan mimics by co-assembly of aromatic peptide and carbohydrate amphiphiles, Alexandra Brito, Yousef M. Abul-Haija, Diana Soares de Costa, Ramon Novoa-Carballal, Rui L. Reis, Rein V. Ulijn, Ricardo A. Pires, and Iva Pashkuleva
MSG-Fast: Metagenomic shotgun data fast annotation using microbial gene catalogs, Stuart M. Brown, Hao Chen, Yuhan Hao, Bobby P. Laungani, Thahmina A. Ali, Changsu Dong, Carlos Lijeron, Baekdoo Kim, Claudia Wultsch, Zhiheng Pei, and Konstantinos Krampis
Implementation Science Research Examining the Integration of Evidence-Based Practices Into HIV Prevention and Clinical Care: Protocol for a Mixed-Methods Study Using the Exploration, Preparation, Implementation, and Sustainment (EPIS) Model, April Idalski Carcone, Karin Coyle, Sitaji Gurung, Demetria Cain, Rafael E. Dilones, Laura Jadwin-Cakmak, Jeffrey T. Parsons, and Sylvie Naar
Racism in Modern Information and Communication Technologies, Jessie Daniels
Peculiar optical properties of bilayer silicene under the influence of external electric and magnetic fields, Thi-Nga Do, Godfrey Gumbs, Po-Hsin Shih, Danhong Huang, Chih-Wei Chiu, Chia-Yun Chen, and Ming-Fa Lin
The United Nations Declaration on the rights of peasants and other people working in rural areas, Marc Edelman and Priscilla Claeys
Venom Diversity and Evolution in the Most Divergent Cone Snail Genus Profundiconus, Guilia Fassio, Maria Vittoria Modica, Lou Mary, Paul Zaharias, Alexander E. Fedosov, Juliette Gorson, Yuri I. Kantor, Mandë E. Holford, and Nicolas Puillandre
College Students and SNAP: The New Face of Food Insecurity in the United States, Nicholas Freudenberg, Sara Goldrick-Rab, and Janet Poppendieck
Racial and Ethnic Disparities in Palliative Care: A Systematic Scoping Review, Daniel Gardner, Meredith Doherty, Gleneara Bates, Aliza Koplow, and Sarah C. Johnson
Janus v AFSCME, Council 31: Judges Will Haunt You in the Second Gilded Age, William A. Herbert
Public Workers, William A. Herbert
Comments from the National Center for the Study of Collective Bargaining in Higher Education and the Professions in Response to Proposed NLRB Rule Concerning Graduate Assistants and Other Student Employees, William A. Herbert and Joseph van der Naald
Innovative collaborations: Social work student interns at public libraries, Sarah C. Johnson
Partnering For Social Justice: MSW Interns in Public Libraries, Sarah C. Johnson
Partnering for Social Justice: Social Work Students’ Placement at Public Libraries, Sarah C. Johnson
The Burgeoning Information Universe: Implication for Social Work Education and Practice, Sarah C. Johnson MSLIS, LMSW; Margaret Bausman LCSW-R, MSLIS; and Sarah Laleman Ward MLIS, MA
Rigidity and Adaptation, Roger Karapin and Leonard Feldman
POSITIVE OUTCOMES OF INVOLVING UNDERGRADUATE AND HIGH SCHOOL STUDENTS IN BROADER ASPECT OF EARTH SYSTEM SCIENCE THROUGH PEER MENTORING AND RESEARCH ACTIVITIES, Nazrul I. Khandaker, Shuayb Siddique, Matthew Khargie, Juanpablo Rodriguez, Adacia Teemal, Krishna Mahabir, Michael Robinson, Ality Aghedo, Zachary A. Sanichar, Sol De Leon, Tamzid Mubin, and Elton Selby
Safe Automated Refactoring for Intelligent Parallelization of Java 8 Streams, Raffi Khatchadourian, Yiming Tang, Mehdi Bagherzadeh, and Syed Ahmed
Safe Automated Refactoring for Intelligent Parallelization of Java 8 Streams, Raffi Khatchadourian, Yiming Tang, Mehdi Bagherzadeh, and Syed Ahmed
Examining Motivational Interviewing's Effect on Confidence and Commitment Using Daily Data, Alexis Kuerbis, Kevin Lynch, Sijing Shao, and Jon Morgenstern
Daily Factors Driving Daily Substance Use and Chronic Pain Among Older Adults with HIV: A Study Using Ecological Momentary Assessment, Alexis Kuerbis, M. Carrington Reid, Jordan Lake, Suzanne Glasner-Edwards, Jessica Jenkins, Diana Liao, Jury Candelario, and Alison A. Moore
Direct Action Housing: Exploring the History of Tenant-led Housing Struggles—on Film—in NYC, Arielle Lawson
Populism or Embedded Plutocracy? The Emerging World Order, Michael Lee
Shifting the Balance of Power: Asking Questions about the Comics-Questions Curriculum, Stephanie M. Margolin, Sarah Laleman Ward, and Mason Brown
Historical Ecology and Longitudinal Research Strategies around Lake Mývatn Iceland, Thomas McGovern, George Hambrecht, and Megan Hicks
Influence of Stimulus Intensity on Multimodal Integration in the Startle Escape System of Goldfish, Camille McIntyre and Thomas Preuss
Effects of AM80 Compared to AC261066 in a High Fat Diet Mouse Model of Liver Disease, Marta Melis, Xiao-Han Tang, Steven E. Trasino, Viral M. Patel, Daniel J. Stummer, Jose Jessurun, and Lorraine J. Gudas
Gender Disparities in Awards to Neuroscience Researchers, David Melnikoff and Virginia Valian
Eighteen Blind Library Users’ Experiences with Library Websites and Search Tools in U.S. Academic Libraries: A Qualitative Study, Adina Mulliken
Adolescent Trials Network for HIV-AIDS Scale It Up Program: Protocol for a Rational and Overview, Sylvie Naar, Jeffrey T. Parsons, and Bonita F. Stanton
Model-Based Methods to Translate Adolescent Medicine Trials Network for HIV/AIDS Interventions Findings Into Policy Recommendations: Rationale and Protocol for a Modeling Core (ATN 161), Anne M. Neilan, Kunjal Patel, Allison L. Agwu, Ingrid V. Bassett, K. Rivet Amico, Catherine M. Crespi, Aditya H. Gaur, Keith J. Horvath, Kimberly A. Powers, H. Jonathon Rendina, Lisa B. Hightow-Weidman, Xiaoming Li, Sylvie Naar, Sharon Nachman, Jeffrey T. Parsons, Kit N. Simpson, Bonita F. Stanton, Kenneth A. Freedberg, Audrey C. Bangs, Michael G. Hudgens, and Andrea L. Ciaranello
Mechanisms of hepatocellular carcinoma progression, Olorunseun O. Ogunwobi, Trisheena Harricharaan, Jeannette Huaman, Anna Galuza, Oluwatoyin Odumuwagun, Yin Tan, Grace X. Ma, and Minhhuyen T. Nguyen
Inclusion of enclosed hydration effects in the binding free energy estimation of dopamine D3 receptor complexes, Rajat Kumar Pal, Satishkumar Gadhiya, Steven Ramsey, Pierpaolo Cordone, Lauren Wickstrom, Wayne W. Harding, Tom Kurtzman, and Emilio Gallicchio
Clinic-Based Delivery of the Young Men’s Health Project (YMHP) Targeting HIV Risk Reduction and Substance Use Among Young Men Who Have Sex with Men: Protocol for a Type 2, Hybrid Implementation-Effectiveness Trial, Jeffrey T. Parsons, Tyrel Starks, Sitaji Gurung, Demetria Cain, Jonathan Marmo, and Sylvie Naar
Validity evaluation of the genetics and genomics in nursing practice survey, Alexandra Plavskin, William E. Samuels, and Kathleen A. Calzone
Geoarchaeological Evidence of Middle-Age Tsunamis at Stromboli and Consequences for the Tsunami Hazard in the Southern Tyrrhenian Sea, M. Rosi, S. T. Levi, M. Pistolesi, A. Bertagnini, D. Brunelli, V. Cannavo, A. Di Renzoni, F. Ferranti, A. Renzulli, and D. Yoon
Advances in geometric techniques for analyzing blebbing in chemotaxing Dictyostelium cells, Zully Santiago, John Loustau, David Meretzky, Devarshi Rawal, and Derrick Brazill
Examination of Human Health Impacts Due to Adverse Climate Events Through the Use of Vulnerability Mapping: A Scoping Review, Michael T. Schmeltz and Peter J. Marcotullio
Changes in Functional Connectivity Following Treatment With Emotion Regulation Therapy, Matthew A. Scult, David M. Fresco, Faith M. Gunning, Conor Liston, Saren H. Seeley, Emmanuel Garcia, and Douglas S. Mennin
Bilingualism, executive function, and beyond: Questions and insights, Irina A. Sekerina, Lauren Spradlin, and Virginia V. Valian
'Constructing Global Order: Agency and Change in World Politics' by Amitav Acharya (review), Zachary C. Shirkey
Social Justice, Debbie Sonu
The Outsider Within: Thoughts and Musings on Exclusion as Stranger-Making, Debbie Sonu
Effects of the KCNQ channel opener ezogabine on functional connectivity of the ventral striatum and clinical symptoms in patients with major depressive disorder, Aaron Tan, Sara Costi, Laurel S. Morris, Nicholas T. Van Dam, Marin Kautz, Alexis E. Whitton, Allyson K. Friedman, Katherine A. Collins, Gabriella Ahle, Nisha Chadha, Brian Do, Diego A. Pizzagalli, Dan V. Iosifescu, Eric J. Nestler, Ming-Hu Han, and James W. Murrough
Dominion Road in Auckland, New Zealand and Chinese Community, Wendy W. Tan
Incheon Chinatown: Cultural Heritage of this Korea's First Chinatown, Wendy W. Tan
Crowd wisdom enhanced by costly signaling in a virtual rating system, Ofer Tchernichovski, Lucas C. Parra, Daniel Fimiarz, Arnon Lotem, and Dalton Conley
Extreme events reveal an alimentary limit on sustained maximal human energy expenditure, Caitlin Thurber, Lara R. Dugas, Cara Ocobock, Bryce Carlson, John R. Speakman, and Herman Pontzer
Works from 2018
Fair Use as Creative Muse: An Ongoing Case Study, Malin Abrahamsson and Stephanie Margolin
GIS Project Management, Jochen Albrecht
Open Source Foundations for Spatial Decision Support Systems, Jochen Albrecht
Enabling precision medicine via standard communication of HTS provenance, analysis, and results, Gil Alterovitz, Dennis Dean, Carole Globe, Michael R. Crusoe, Stiam Soiland-Reyes, Amanda Bell, Anais Hayes, Anita Suresh, Anjan Purkkayastha, Charles H. King, Dan Taylor, Elaine Johanson, Elaine E. Thompson, Eric Donaldson, Hiroki Morizono, Hsinyi Tsang, Jeet K. Vora, Jeremy Goecks, Jianchao Yao, Jonas S. Almeida, Jonathon Keeney, KanakaDurga Addepalli, Konstantinos Krampis, Krista M. Smith, Lydia Guo, Mark Walderhaug, Marco Schito, Matthew Ezewudo, Nuria Guimera, Paul Walsh, Robel Kahsay, Srikanth Gottipati, Timothy C. Rodwell, Toby Bloom, Yuching Lai, Vahan Simonyan, and Raja Mazumder
Chronic voluntary oral methamphetamine induces deficits in spatial learning and hippocampal protein kinase Mzeta with enhanced astrogliosis and cyclooxygenase-2 levels, Jorge A. Avila, Roseanna M. Zanca, Denis Shor, Nicholas Paleologos, Amber A. Alliger, Maria E. Figueiredo-Pereira, and Peter A. Serrano
A description of nesting behaviors, including factors impacting nest site selection, in black‐and‐white ruffed lemurs (Varecia variegata), Andrea L. Baden
Facilitating Video Analysis for Teacher Development: A Systematic Review of the Research, Laura H. Baecher, Shiao-Chuan Kung, Sarah Laleman Ward, and Kimberly Kern
Bad Bunny, Good Scapegoat: How 'El Conejo Malo' Is Stirring a 'Moral Panic' in Post-Hurricane Puerto Rico, Yarimar Bonilla
Leveraging PET to image folate receptor α therapy of an antibody-drug conjugate, Christian Brand, Ahmad Sadique, Jacob L. Houghton, Kishore Gangagari, Jose F. Ponte, Jason S. Lewis, Naga Vara Kishore Pillarsetty, Joseph A. Konner, and Thomas Reiner
A systematic review of non-pharmacological interventions to improve nighttime sleep among residents of long-term care settings, Elizabeth Capezuti, Rana Sagha Zadeh, Kevin Pain, Aleksa Basara, Nancy Ziyan Jiang, and Ana C. Krieger
Target engagement imaging of PARP inhibitors in small-cell lung cancer, Brandon Carney, Susanne Kossatz, Benjamin H. Lok, Valentina Schneeberger, Kishore K. Gangangari, Naga Vara Kishore Pillarsetty, Wolfgang A. Weber, Charles M. Rudin, John T. Poirier, and Thomas Reiner
Primordial origin and diversification of plasmids in Lyme disease agent bacteria, Sherwood R. Casjens, Lia Di, Saymon Akther, Emmanuel F. Mongodin, Benjamin J. Luft, Steven E. Schutzer, Claire M. Fraser, and Weigang Qiu
Prostaglandin D2/J2 signaling pathway in a rat model of neuroinflammation displaying progressive parkinsonian-like pathology: potential novel therapeutic targets, Chuhyon Corwin, Anastasia Nikolopoulou, Allen L. Pan, Mariela Nunez-Santos, Shankar Vallabhajosula, Peter A. Serrano, John Babich, and Maria E. Figueiredo-Pereira
The algorithmic rise of the “alt-right”, Jessie Daniels
W.E.B. DuBois for the Twenty‐First Century: On Being a Scholar‐Activist in the Digital Era, Jessie Daniels
When the Far-Right Attacks Faculty Online, They are Attacking Public Higher Education, Jessie Daniels
White Women, U.S. Popular Culture, and Narratives of Addiction, Jessie Daniels
Single olfactory receptors set odor detection thresholds, Adam Dewan, Annika Cichy, Jingji Zhang, Kayla Miguel, Paul Feinstein, Dmitry Rinberg, and Thomas Bozza
Use and Awareness of Library Services among Faculty at Two Armenian Universities, D. Aram Donabedian, John Carey, and Arshak Balayan
Discriminating radiation injury from recurrent tumor with [18F]PARPi and amino acid PET in mouse models, Patrick L. Donabedian, Susanne Kossatz, John A. Engelbach, Stephen A. Jannetti, Brandon Carney, Robert J. Young, Wolfgang A. Weber, Joel R. Garbow, and Thomas Reiner
‘Haciendas and Plantations’: History and limitations of a 60-year-old taxonomy, Marc Edelman
Using Drosophila behavioral assays to characterize terebrid venompeptide bioactivity, Anders Eriksson, Prachi Anand, Juliette Gorson, Corina Grijuc, Elina Hadelia, James C. Stewart, Mandë Holford, and Adam Claridge-Chang
LIM Protein Ajuba associates with the RPA complex through direct cell cycle-dependent interaction with the RPA70 subunit, Sandy Fowler, Pascal Maguin, Sampada Kalan, and Diego Loayza
Ten Years of Food Policy Governance in New York City: Lessons for the Next Decade, Nicholas Freudenberg, Nevin Cohen, Janet Poppendieck, and Craig Willingham
Disparities in pulmonary fibrosis care in the United States: an analysis from the Nationwide Inpatient Sample, Adam W. Gaffney, Steffie Woolhander, David Himmelstein, and Danny McCormick
TMSOTf assisted synthesis of 2’-deoxy-2’-[18F] fluoro-β-D-arabinofuranosylcytosine ([18F] FAC), Kishore K. Gangangari, John L. Humm, Steven M. Larson, and Naga Vara Kishore Pillarsetty
Evolution of the modern baboon (Papio hamadryas): A reassessment of the African Plio-Pleistocene record, Christopher C. Gilbert, Stephen R. Frost, Kelsey D. Pugh, Monya Anderson, and Eric Delson
Building Brand Kurdistan: Helly Luv, the Gender of Nationhood, and the War on Terror, Nicholas S. Glastonbury
Jerome Lefkowitz: A Pragmatic Intellect and Major Figure in Taylor Law HistoryTaylor Law History, William A. Herbert
Total Eclipse of the Court? Janus v. AFSCME, Council 31 in Historical, Legal, and Public Policy Contexts, William A. Herbert, Sarah Cudahy, and John Wirenius
BpWrapper: BioPerl-based sequence and tree utilities for rapid prototyping of bioinformatics pipelines, Yözen Hernández, Rocky Bernstein, Pedro Pagan, Levy Vargas, William McCaig, Girish Ramrattan, Saymon Akther, Amanda Larracuente, Lia Di, Filipe G. Vieira, and Weigang Qiu
A new insight into underlying disease mechanism through semi-parametric latent differential network model, Yong He, Jiadong Ji, Lei Xie, Xinsheng Zhang, and Fuzhong Xue
An Interview with Cesare Montecucco, Mandë Holford and Andreas Rummel
Thrive With Me: Protocol for a Randomized Controlled Trial to Test a Peer Support Intervention to Improve Antiretroviral Therapy Adherence Among Men Who Have Sex With Men, Keith J. Horvath, K. Rivet Amico, Darin Erickson, Alexandra M. Ecklund, Aldona Martinka, James DeWitt, Jeffrey McLaughlin, and Jeffrey T. Parsons
Designing a Summer Transition Program for Incoming and Current College Students on the Autism Spectrum: A Participatory Approach, Emily Hotez, Christina Shane-Simpson, Rita Obeid, Danielle DeNigris, Michael Siller, Corinna Costikas, Jonathan Pickens, Anthony Massa, Michael Giannola, Joanne D'Onofrio, and Kristen Gillespie-Lynch
Comparing Microbiome Sampling Methods in a Wild Mammal: Fecal and Intestinal Samples Record Different Signals of Host Ecology, Evolution, Melissa R. Ingala, Nancy B. Simmons, Claudia Wultsch, Konstantinos Krampis, Kelly A. Speer, and Susan L. Perkins
Disequilibrium, Adaptation, and the Norse Settlement of Greenland, Rowan Jackson, Jette Arneborg, Andrew Dugmore, Christian Madsen, Tom McGovern, Konrad Smiarowski, and Richard Streeter
MSW Interns at Public Libraries: Fostering Collaboration For Change, Sarah C. Johnson
Social science perspectives on drivers of and responses to global, Andrew K. Jorgenson, Shirley Fiske, Klaus Hubacek, Jia Li, Tom McGovern, Torben Rick, Juliet B. Schor, William Solecki, Richard York, and Ariela Zycherman
Not Waiting for Washington: Climate Policy Adoption in California and New York, Roger Karapin
Proactive Empirical Assessment of New Language Feature Adoption via Automated Refactoring: The Case of Java 8 Default Methods, Raffi Khatchadourian and Hidehiko Masuhara
Proactive Empirical Assessment of New Language Feature Adoption via Automated Refactoring: The Case of Java 8 Default Methods, Raffi Khatchadourian and Hidehiko Masuhara
A Tool for Optimizing Java 8 Stream Software via Automated Refactoring, Raffi Khatchadourian, Yiming Tang, Mehdi Bagherzadeh, and Syed Ahmed
The Relationship Between In-session Commitment Language and Daily Self-reported Commitment to Reduce or Abstain from Drinking, Alexis Kuerbis, Jessica Houser, Paul Amrhein, Hayley Treloar Padovano, and Jon Morgenstern
Exploration of Treatment Matching to Problem Drinker Characteristics With Motivational Interviewing and Non-directive Client-centered Psychotherapy for Problem Drinkers, Alexis Kuerbis, Jessica Houser, Svetlana Levak, Sijing Shao, and Jon Morgenstern
